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Report for CCDS43570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43570.1 Public Homo sapiens 7 MATCAP2 24 110 108 CCDS HistoryNCBI Gene:23366Re-query CCDS DB by CCDS ID:43570.1Re-query CCDS DB by GeneID:23366See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297063.10 ENSP00000297063.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297063.10Link to Ensembl Protein Viewer:ENSP00000297063.6Re-query CCDS DB by Nucleotide ID:ENST00000297063Re-query CCDS DB by Protein ID:ENSP00000297063
Original member Current member NCBI NM_001100425.2 NP_001093895.1 Accepted alive Link to Nucleotide Sequence:NM_001100425.2Link to Protein Sequence:NP_001093895.1Re-query CCDS DB by Nucleotide ID:NM_001100425Re-query CCDS DB by Protein ID:NP_001093895Link to BLAST:NP_001093895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093895.1 520 Q8NCT3-1 520 100% 0 0

Chromosomal Locations for CCDS 43570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 36326760 36326918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36330982 36331079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36333856 36334161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36335046 36335178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36356902 36357590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36383859 36383928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 36389967 36390074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCTGGCTGCACCCGCAAACTCACTCACCTCCGTAAACGGATCCATCGCCCCAGGCGTCGGACTACGA
GACGATGGAAACGGTGGTTCAAATTCAGGAAGAGAAAAGGAGAGAAAAGGCCAAGACCTAATCATAAGGC
AGTGGCAAGAAGAGCTAAACTCAAGTTCTCTACCTCAGAAAAGCTTCACTGGCCTGAGCAAGAACTTGCT
AAGAAGTCTATTCTAAATGCAGAAGATTCATTGATCATTGACAACAAAAGAAGCATTTCACATTTGTCCT
CGGGAGTGCTAAAAGACATTTTCACAACTGGAACCAGTAGTTACAATGTCCTACTACAGAGCAAGGAGGA
AAAAAAGTATCATTCACAAAAACAGTCTTCCTCCACCTACTCCAAAAGATGTAGAAAACCCAGCAAATCT
CCTAACACTTCTCGTAGCAAAGATCCTCGCAGGATGAAAGCCCTGGTGCCTGTGACAAGCAGTGGTACTT
GGTACTGCCTGGAGAGGCGGCCTGCTGTTTTTGTCACTAGTTCAGTGTCAAGTCCTGTAAAGTTTACACA
TGATATCTCTGTTACAGGGAATGGCATAGTACTGCCACCTAAACCCAAAAGCAAGGTCAAGTGGTGCCAT
TTCTCCACTCTTCCAAAGCCAAAGCCTCAGCTGTCTAGAAGCTTTGAAAAGGGAGATGACTTTTCTGGGA
AGAAATTTTGTATATTGACTGCTATAAAACCCACCAACTTAGAGAAAGAAAAACTGAGATTCTTCAAATC
TGACTATACCTACAATCCTCAGTTTGAGTATGCCAATCCTGCTCTGCCAAGCGTATTAGCTAAGCATAGC
CACGCATCTGACCGATTTCTTAAGCAGATTGTAGTTCATCTCACTGAGGACCTGCTTTCCCGAGCGTCAA
TGACAGTAGTAAATGGATGTCCGACTCTGACTATCAATGTGTCCACTGCACGTGAGCATTGGCTGGAGGG
AATGCTGAGGCATGAAATAGGTACACATTATTTTCGAGGTATTAACAACCTCCAGCAGCCATGGAACAGT
TGGACTGGACGTAAAAAACATGAGCTAAAGCCAAATAATCCCACAGAGGAAGGACTAGCAAGCATTCACA
GTGTTCTGTTTAGAAAAGACCCTTTTTTATGGAGGGCTGCCCTCCTCTACTACACTGTTTATCAAGCCAG
CCAAATGTCTTTTTGTGAACTCTTTAAAGATATTGGCAGGTTTGTCAAGGACCCCAATACAAGATGGGAT
TATTGTGTACGGGCCAAGAGGGGATGGACTGATACTTCCCAACCAGGGTGTTTTAGTAAAGACCAGGTAT
ACTTGGATGGAATTCTTCAAATCCTCCGATACAGAGATACCATAGACTTCCATCTGCTGACTGCTCTCGG
GAAGGTTTCTTATGAAGATGTGGATCGCTTAAAAGGATTGGCAGTTACCGAAAACATGAGGGTCCCTCAT
TTCCTGCAGGACCATGGCCGATATATGGAACACTTAGAGAAGATCATGGAAGTGAATGAACTGACTGACA
GGGAACTGAAAGATCTTATATAG

Translation (520 aa):
MAGCTRKLTHLRKRIHRPRRRTTRRWKRWFKFRKRKGEKRPRPNHKAVARRAKLKFSTSEKLHWPEQELA
KKSILNAEDSLIIDNKRSISHLSSGVLKDIFTTGTSSYNVLLQSKEEKKYHSQKQSSSTYSKRCRKPSKS
PNTSRSKDPRRMKALVPVTSSGTWYCLERRPAVFVTSSVSSPVKFTHDISVTGNGIVLPPKPKSKVKWCH
FSTLPKPKPQLSRSFEKGDDFSGKKFCILTAIKPTNLEKEKLRFFKSDYTYNPQFEYANPALPSVLAKHS
HASDRFLKQIVVHLTEDLLSRASMTVVNGCPTLTINVSTAREHWLEGMLRHEIGTHYFRGINNLQQPWNS
WTGRKKHELKPNNPTEEGLASIHSVLFRKDPFLWRAALLYYTVYQASQMSFCELFKDIGRFVKDPNTRWD
YCVRAKRGWTDTSQPGCFSKDQVYLDGILQILRYRDTIDFHLLTALGKVSYEDVDRLKGLAVTENMRVPH
FLQDHGRYMEHLEKIMEVNELTDRELKDLI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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