NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43611.1 Public Homo sapiens 7 STEAP4 24 110 108 CCDS HistoryNCBI Gene:79689Re-query CCDS DB by CCDS ID:43611.1Re-query CCDS DB by GeneID:79689See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43611.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380079.9 ENSP00000369419.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380079.9Link to Ensembl Protein Viewer:ENSP00000369419.4Re-query CCDS DB by Nucleotide ID:ENST00000380079Re-query CCDS DB by Protein ID:ENSP00000369419
Original member Current member NCBI NM_001205315.2 NP_001192244.1 Accepted alive Link to Nucleotide Sequence:NM_001205315.2Link to Protein Sequence:NP_001192244.1Re-query CCDS DB by Nucleotide ID:NM_001205315Re-query CCDS DB by Protein ID:NP_001192244Link to BLAST:NP_001192244.1
Original member Current member NCBI NM_024636.4 NP_078912.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024636.4Link to Protein Sequence:NP_078912.2Re-query CCDS DB by Nucleotide ID:NM_024636Re-query CCDS DB by Protein ID:NP_078912Link to BLAST:NP_078912.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192244.1 459 Q687X5-1 459 100% 0 0
NP_078912.2 459 Q687X5-1 459 100% 0 0

Chromosomal Locations for CCDS 43611.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 88279398 88279628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88280915 88281079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88282641 88283168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 88283814 88284269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGAGAAAACTTGTATAGATGCACTTCCTCTTACTATGAATTCTTCAGAAAAGCAAGAGACTGTATGTA
TTTTTGGAACTGGTGATTTTGGAAGATCACTGGGATTGAAAATGCTCCAGTGTGGTTATTCTGTTGTTTT
TGGAAGTCGAAACCCCCAGAAGACCACCCTACTGCCCAGTGGTGCAGAAGTCTTGAGCTATTCAGAAGCA
GCCAAGAAGTCTGGCATCATAATCATAGCAATCCACAGAGAGCATTATGATTTTCTCACAGAATTAACTG
AGGTTCTCAATGGAAAAATATTGGTAGACATCAGCAACAACCTCAAAATCAATCAATATCCAGAATCTAA
TGCAGAGTACCTTGCTCATTTGGTGCCAGGAGCCCACGTGGTAAAAGCATTTAACACCATCTCAGCCTGG
GCTCTCCAGTCAGGAGCACTGGATGCAAGTCGGCAGGTGTTTGTGTGTGGAAATGACAGCAAAGCCAAGC
AAAGAGTGATGGATATTGTTCGTAATCTTGGACTTACTCCAATGGATCAAGGATCACTCATGGCAGCCAA
AGAAATTGAAAAGTACCCCCTGCAGCTATTTCCAATGTGGAGGTTCCCCTTCTATTTGTCTGCTGTGCTG
TGTGTCTTCTTGTTTTTCTATTGTGTTATAAGAGACGTAATCTACCCTTATGTTTATGAAAAGAAAGATA
ATACATTTCGTATGGCTATTTCCATTCCAAATCGTATCTTTCCAATAACAGCACTTACACTGCTTGCTTT
GGTTTACCTCCCTGGTGTTATTGCTGCCATTCTACAACTGTACCGAGGCACAAAATACCGTCGATTCCCA
GACTGGCTTGACCACTGGATGCTTTGCCGAAAGCAGCTTGGCTTGGTAGCTCTGGGATTTGCCTTCCTTC
ATGTCCTCTACACACTTGTGATTCCTATTCGATATTATGTACGATGGAGATTGGGAAACTTAACCGTTAC
CCAGGCAATACTCAAGAAGGAGAATCCATTTAGCACCTCCTCAGCCTGGCTCAGTGATTCATATGTGGCT
TTGGGAATACTTGGGTTTTTTCTGTTTGTACTCTTGGGAATCACTTCTTTGCCATCTGTTAGCAATGCAG
TCAACTGGAGAGAGTTCCGATTTGTCCAGTCCAAACTGGGTTATTTGACCCTGATCTTGTGTACAGCCCA
CACCCTGGTGTACGGTGGGAAGAGATTCCTCAGCCCTTCAAATCTCAGATGGTATCTTCCTGCAGCCTAC
GTGTTAGGGCTTATCATTCCTTGCACTGTGCTGGTGATCAAGTTTGTCCTAATCATGCCATGTGTAGACA
ACACCCTTACAAGGATCCGCCAGGGCTGGGAAAGGAACTCAAAACACTAG

Translation (459 aa):
MEKTCIDALPLTMNSSEKQETVCIFGTGDFGRSLGLKMLQCGYSVVFGSRNPQKTTLLPSGAEVLSYSEA
AKKSGIIIIAIHREHYDFLTELTEVLNGKILVDISNNLKINQYPESNAEYLAHLVPGAHVVKAFNTISAW
ALQSGALDASRQVFVCGNDSKAKQRVMDIVRNLGLTPMDQGSLMAAKEIEKYPLQLFPMWRFPFYLSAVL
CVFLFFYCVIRDVIYPYVYEKKDNTFRMAISIPNRIFPITALTLLALVYLPGVIAAILQLYRGTKYRRFP
DWLDHWMLCRKQLGLVALGFAFLHVLYTLVIPIRYYVRWRLGNLTVTQAILKKENPFSTSSAWLSDSYVA
LGILGFFLFVLLGITSLPSVSNAVNWREFRFVQSKLGYLTLILCTAHTLVYGGKRFLSPSNLRWYLPAAY
VLGLIIPCTVLVIKFVLIMPCVDNTLTRIRQGWERNSKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH