NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43789.1 Public Homo sapiens 9 CNTLN 24 110 108 CCDS HistoryNCBI Gene:54875Re-query CCDS DB by CCDS ID:43789.1Re-query CCDS DB by GeneID:54875See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43789.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380647.8 ENSP00000370021.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380647.8Link to Ensembl Protein Viewer:ENSP00000370021.3Re-query CCDS DB by Nucleotide ID:ENST00000380647Re-query CCDS DB by Protein ID:ENSP00000370021
Original member Current member NCBI NM_017738.4 NP_060208.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017738.4Link to Protein Sequence:NP_060208.2Re-query CCDS DB by Nucleotide ID:NM_017738Re-query CCDS DB by Protein ID:NP_060208Link to BLAST:NP_060208.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060208.2 1406 Q9NXG0-2 1406 100% 0 0

Chromosomal Locations for CCDS 43789.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 17135066 17135425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17143288 17143376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17226203 17226287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17235658 17235792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17236409 17236588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17273733 17273866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17298190 17298352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17309058 17309252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17330632 17330808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17332605 17332730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17340827 17340948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17342325 17342444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17366617 17366717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17388162 17388253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17394534 17395069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17409293 17409473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17415788 17415881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17415966 17416189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17457524 17457715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17462916 17463013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17464497 17464623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17465981 17466118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17466706 17466891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17484295 17484480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17486989 17487066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 17502551 17502652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4221 nt):
ATGGCGGCGCGTTCGCCTCCCTCACCGCACCCTTCGCCCCCAGCGCGACAGCTGGGCCCCAGGTCCCCAC
GTGTTGGGCGGGGAGCTGAAGTACACGCAATGCGCAGCGAGGCCTCGGGTTTTGCCGGCGCAGCGCGGGA
GGTGGTCGCGGACGAAAGTGATAAAATCTGGGTGGGTGAAGAAGGGTCAGGGGGCCGGCGAGGGCCTGGG
GGGGCAGCTCCGGCTCATGCTCCCCTCCTCAGCGCGCCCATGGGGTCCAGACGGCTAGAGGGCATCTCGG
TAGAGGAGGCGATGGTGACCCGGACGCAGCTGCTGGAGGAAGAGCTGAGCAGCCTAAAGGAGGAGTTGGC
CCTGTGTCAGGCTGATAAAGAATTTGTATGGTCTTTGTGGAAACGTCTCCAGGTTACAAACCCAGATCTC
ACACAAGTGGTCAGTTTGGTTGTGGAAAGAGAAAAACAGAAATCTGAAGCTAAAGACAGAAAAGTTCTAG
AAATTCTGCAAGTCAAGGATGCCAAAATACAAGAATTTGAACAGAGAGAGTCAGTACTGAAACAGGAAAT
AAATGACCTTGTAAAACGGAAAATTGCAGTAGATGAAGAAAATGCTTTCTTAAGGAAAGAATTCAGTGAC
TTGGAGAAGAAATTTAAAGATAAAAGTCAAGAAATTAAGGACACTAAGGAGTGTGTACAGAACAAAGAAG
AGCAAAACAGACTAGTTATAAAAAATCTGGAGGAGGAAAACAAGAAATTAAGTACCCGCTGCACTGACCT
GCTAAATGACCTGGAGAAATTGAGGAAGCAGGAAGCACATTTGAGAAAAGAAAAATATAGCACTGATGCA
AAAATAAAGACCTTTGAAGACAATTTAATTGAAGCAAGGAAAGAAGTTGAAGTATCACAGAGTAAATACA
ATGCTCTATCATTACAGTTGAGTAATAAACAGACTGAACTTATCCAGAAGGATATGGATATTACCCTGGT
CAGGAAGGAACTGCAGGAGCTGCAGAATCTTTACAAACAGAACAGTACACATACAGCCCAGCAAGCAGAG
CTGATCCAGCAGCTTCAGGTTCTCAATATGGACACACAAAAAGTACTGAGAAATCAGGAAGATGTTCACA
CAGCTGAAAGTATATCATATCAAAAACTTTACAATGAGTTACATATTTGTTTTGAAACCACAAAATCAAA
TGAAGCTATGCTCCGGCAAAGTGTTACTAATCTTCAGGATCAGCTATTACAAAAAGAGCAAGAAAATGCT
AAGTTAAAAGAAAAACTTCAGGAATCACAGGGAGCACCTCTTCCTTTACCTCAAGAAAGTGATCCAGACT
ACTCAGCACAGGTACCTCATCGCCCATCCTTATCAAGCTTAGAAACGTTAATGGTTTCACAGAAGTCTGA
AATTGAGTATTTACAGGAGAAACTAAAGATAGCAAATGAAAAACTGTCAGAAAACATATCTGCCAACAAG
GGTTTCTCCCGAAAGAGCATCATGACAAGTGCTGAAGGAAAACATAAGGAACCACCTGTGAAACGTTCAA
GGTCTTTGTCCCCAAAGAGCTCTTTCACAGACTCAGAAGAGCTACAGAAGCTGAGAAAAGCTGAAAGAAA
GATTGAAAACTTAGAGAAGGCACTACAACTAAAGAGCCAAGAAAATGATGAGCTAAGAGATGCCCATGAA
AAACGCAAGGAACGGCTACAGATGTTACAGACCAACTACAGAGCAGTAAAAGAGCAATTAAAACAGTGGG
AAGAAGGCAGTGGCATGACTGAAATCAGGAAAATAAAGAGAGCAGATCCCCAACAACTTCGACAAGAAGA
TTCTGACGCTGTGTGGAATGAACTGGCATATTTCAAAAGGGAAAACCAGGAGCTAATGATTCAAAAGATG
AATCTTGAAGAAGAATTAGATGAACTTAAAGTACATATATCTATTGATAAGGCAGCAATACAAGAATTGA
ATAGATGTGTGGCAGAGAGAAGAGAAGAACAGCTCTTTAGATCTGGTGAAGATGATGAGGTCAAGAGGAG
TACTCCAGAGAAGAATGGAAAAGAAATGTTGGAGCAGACATTACAGAAGGTCACTGAGTTGGAAAATCGG
CTGAAATCTTTTGAGAAAAGGTCGAGAAAATTAAAAGAAGGGAATAAAAAATTAATGAAAGAAAATGATT
TTCTGAAATCCCTCTTAAAACAGCAACAAGAAGATACAGAGACCAGAGAAAAAGAGCTAGAACAGATAAT
AAAGGGGAGTAAAGATGTAGAAAAAGAAAATACTGAACTTCAAGTAAAAATCAGTGAGCTGGAGACAGAA
GTCACTTCCCTGAGGAGACAAGTGGCAGAAGCTAATGCATTGAGAAATGAAAATGAAGAGCTGATCAACC
CAATGGAGAAATCACACCAGTCAGCAGACAGAGCTAAATCCGAGATGGCCACCATGAAAGTGAGATCTGG
ACGATATGATTGTAAGACAACTATGACCAAGGTTAAATTTAAAGCTGCGAAGAAAAATTGCTCTGTGGGT
CGTCACCACACTGTTCTCAATCATTCCATCAAGGTTATGAGCAATGTGTTTGAGAACCTCAGCAAGGACG
GCTGGGAGGATGTGAGTGAAAGCAGCAGTGATTCTGAAGCACAGACCTCTCAAACTTTGGGAACAATTAT
TGTAGAAACATCCCAGAAAATAAGTCCTACGGAAGATGGAAAAGACCAGAAAGAAAGTGATCCAACAGAA
GACAGCCAAACACAAGGAAAAGAAATAGTACAGACATATTTAAATATAGATGGCAAGACCCCAAAGGACT
ATTTTCATGATAAGAATGCCAAAAAACCAACTTTTCAAAAGAAGAATTGCAAGATGCAAAAGAGTTCACA
TACAGCAGTTCCTACTAGAGTCAACAGAGAAAAGTACAAAAATATAACTGCCCAGAAATCAAGTAGCAAT
ATTATTTTATTACGAGAACGGATTATATCCTTGCAACAACAAAACAGTGTACTTCAGAATGCCAAGAAAA
CAGCAGAATTGTCTGTTAAAGAATATAAAGAAGTTAATGAAAAGCTCCTCCATCAACAGCAAGTATCCGA
TCAACGATTTCAGACAAGCAGGCAGACAATAAAGAAGCTAAATTTGGATTTGGCTGGGCTTCGGAAAGAA
AAAGAAGATTTACTAAAGAAATTGGAGTCCTCATCTGAAATCACAAGTTTGGCAGAAGAAAATTCCCAGG
TAACATTTCCACGGATACAAGTTACATCACTTAGTCCTTCAAGGAGCATGGATTTGGAAATGAAGCAATT
GCAGTATAAACTAAAGAATGCTACTAATGAACTCACTAAACAGTCATCAAATGTGAAGACTTTGAAATTT
GAACTCCTAGCAAAAGAAGAACACATAAAGGAAATGCATGAAAAGATATCTCGAATGGAGAGGGATATAA
CTATGAAAAGACATTTGATAGAGGACTTGAAATTTCGACAGAAAGTAAATTTGGAAAGTAACAAGAGTTT
TAGTGAAATGTTACAAAATCTTGATAAAAAGGTAAAGACATTAACTGAAGAATGTTCCAACAAGAAGGTA
TCAATTGATTCACTAAAGCAAAGACTTAACGTTGCTGTAAAAGAAAAGTCACAGTATGAACAGATGTATC
AGAAATCTAAAGAGGAGTTAGAAAAAAAGGATCTCAAGCTTACTCTCCTAGTATCAAGAATAAGTGAGAC
TGAATCTGCAATGGCAGAAATTGAAACAGCAGCATCTAAGCAGCTTCAAGAATTAGCATTGCAAAGTGAA
CAGGTCCTAGAAGGTGCACAGAAGACATTGCTGTTAGCCAATGAAAAAGTAGAAGAGTTCACCACATTTG
TGAAGGCTTTGGCCAAAGAGTTGCAAAATGATGTCCATGTGGTAAGGCGACAAATAAGAGAGCTTAAAAA
AATGAAGAAAAACAGGGACGCCTGTAAAACCTCAACCCATAAAGCCCAGACCTTGGCAGCTTCTATCCTG
AACATTTCACGGTCAGATTTAGAGGAAATATTAGACACAGAAGATCAAGTGGAAATTGAAAAAACAAAAA
TTGATGCTGAAAATGACAAGGAATGGATGTTGTACATTCAGAAACTTCTTGAAGGACAGCTTCCTTTTGC
CTCATATTTACTAGAAGCAGTACTGGAAAAAATAAATGAAAAAAAGAAACTAGTTGAAGGATATTTCACA
ATTATGAAAGATATTAGATGA

Translation (1406 aa):
MAARSPPSPHPSPPARQLGPRSPRVGRGAEVHAMRSEASGFAGAAREVVADESDKIWVGEEGSGGRRGPG
GAAPAHAPLLSAPMGSRRLEGISVEEAMVTRTQLLEEELSSLKEELALCQADKEFVWSLWKRLQVTNPDL
TQVVSLVVEREKQKSEAKDRKVLEILQVKDAKIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSD
LEKKFKDKSQEIKDTKECVQNKEEQNRLVIKNLEEENKKLSTRCTDLLNDLEKLRKQEAHLRKEKYSTDA
KIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAE
LIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELHICFETTKSNEAMLRQSVTNLQDQLLQKEQENA
KLKEKLQESQGAPLPLPQESDPDYSAQVPHRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSENISANK
GFSRKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELQKLRKAERKIENLEKALQLKSQENDELRDAHE
KRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIRKIKRADPQQLRQEDSDAVWNELAYFKRENQELMIQKM
NLEEELDELKVHISIDKAAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVTELENR
LKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELETE
VTSLRRQVAEANALRNENEELINPMEKSHQSADRAKSEMATMKVRSGRYDCKTTMTKVKFKAAKKNCSVG
RHHTVLNHSIKVMSNVFENLSKDGWEDVSESSSDSEAQTSQTLGTIIVETSQKISPTEDGKDQKESDPTE
DSQTQGKEIVQTYLNIDGKTPKDYFHDKNAKKPTFQKKNCKMQKSSHTAVPTRVNREKYKNITAQKSSSN
IILLRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLAGLRKE
KEDLLKKLESSSEITSLAEENSQVTFPRIQVTSLSPSRSMDLEMKQLQYKLKNATNELTKQSSNVKTLKF
ELLAKEEHIKEMHEKISRMERDITMKRHLIEDLKFRQKVNLESNKSFSEMLQNLDKKVKTLTEECSNKKV
SIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMAEIETAASKQLQELALQSE
QVLEGAQKTLLLANEKVEEFTTFVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASIL
NISRSDLEEILDTEDQVEIEKTKIDAENDKEWMLYIQKLLEGQLPFASYLLEAVLEKINEKKKLVEGYFT
IMKDIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH