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Report for CCDS43874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43874.1 Public Homo sapiens 9 RC3H2 24 110 108 CCDS HistoryNCBI Gene:54542Re-query CCDS DB by CCDS ID:43874.1Re-query CCDS DB by GeneID:54542See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43874.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357244.7 ENSP00000349783.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357244.7Link to Ensembl Protein Viewer:ENSP00000349783.2Re-query CCDS DB by Nucleotide ID:ENST00000357244Re-query CCDS DB by Protein ID:ENSP00000349783
Original member Current member EBI ENST00000373670.5 ENSP00000362774.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373670.5Link to Ensembl Protein Viewer:ENSP00000362774.1Re-query CCDS DB by Nucleotide ID:ENST00000373670Re-query CCDS DB by Protein ID:ENSP00000362774
Original member Current member NCBI NM_001100588.3 NP_001094058.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100588.3Link to Protein Sequence:NP_001094058.1Re-query CCDS DB by Nucleotide ID:NM_001100588Re-query CCDS DB by Protein ID:NP_001094058Link to BLAST:NP_001094058.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094058.1 1191 Q9HBD1-1 1191 100% 0 0

Chromosomal Locations for CCDS 43874.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122849627 122849822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122851081 122851229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122851323 122851436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122853952 122854086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122854185 122854266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122854531 122854615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122855184 122855397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122855732 122855878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122857923 122858093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122858669 122859102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122859917 122860131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122865349 122865657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122877471 122877583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122879755 122879873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122879993 122880125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122880594 122880794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122883204 122883379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122890312 122890545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122892909 122893026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122897279 122897509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3576 nt):
ATGCCTGTGCAGGCAGCTCAATGGACAGAATTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGA
AT
GTGCACAAACCCATCAGTTTAGGTTGTTCACACACTGTTTGCAAGACCTGCTTGAATAAACTTCATCG
A
AAAGCTTGTCCTTTTGACCAGACTGCCATCAACACAGATATTGATGTACTTCCTGTCAACTTCGCACTT
CTC
CAGTTAGTTGGAGCCCAGGTACCAGATCATCAGTCAATTAAGTTAAGTAATCTAGGTGAGAATAAAC
AC
TATGAGGTTGCAAAGAAATGCGTTGAGGATTTGGCACTCTACTTAAAACCACTAAGTGGAGGTAAAGG
T
GTAGCTAGCTTGAACCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAACTGGTGACACTTGTAAACTGT
CAA
CTGGTGGAGGAAGAAGGTCGTGTAAGAGCCATGCGAGCAGCTCGTTCCCTTGGAGAAAGAACTGTAA
CA
GAACTGATATTACAGCACCAGAACCCTCAGCAGTTGTCTGCCAATCTATGGGCCGCTGTCAGGGCTCG
A
GGATGCCAGTTTTTAGGGCCAGCTATGCAAGAAGAGGCCTTGAAGCTGGTGTTACTGGCATTAGAAGAT
GGT
TCTGCCCTCTCAAGGAAAGTTCTGGTACTTTTTGTTGTGCAGAGACTAGAACCAAGATTTCCTCAGG
CA
TCAAAAACAAGTATTGGTCATGTTGTGCAACTACTGTATCGAGCTTCTTGTTTTAAGGTTACCAAAAG
A
GATGAAGACTCTTCCCTAATGCAGCTGAAGGAGGAATTTCGGAGTTATGAAGCATTACGCAGAGAACAT
GAT
GCCCAAATTGTTCATATTGCCATGGAAGCAGGACTCCGTATTTCACCTGAACAGTGGTCCTCTCTTT
TG
TATGGTGATTTGGCTCATAAATCACACATGCAGTCTATCATTGATAAGCTACAGTCTCCAGAGTCATT
T
GCAAAGAGTGTCCAGGAATTGACAATTGTTTTGCAACGAACAGGTGACCCAGCTAACTTAAATAGACTG
AGG
CCTCATTTAGAGCTTCTTGCAAACATAGACCCTAATCCAGACGCTGTTTCACCAACTTGGGAGCAGC
TG
GAAAATGCAATGGTAGCTGTTAAAACAGTAGTTCATGGCCTTGTGGACTTCATACAAAATTATAGTAG
A
AAAGGCCATGAGACCCCTCAGCCTCAGCCAAACAGCAAATACAAGACTAGCATGTGCCGAGATTTGCGA
CAG
CAAGGGGGTTGTCCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAAGTATC
GA
TTAAGGAACAAAAAGATCAATGCCACTGTAAGAACGTTTCCTCTTCTAAATAAAGTTGGTGTAAACAA
C
ACTGTCACAACCACAGCCGGAAATGTCATTTCTGTCATAGGAAGTACTGAAACAACAGGGAAAATTGTT
CCA
AGTACAAACGGAATTTCAAATGCAGAAAACAGTGTTTCCCAGCTAATCTCACGTAGTACTGACAGTA
CC
TTAAGAGCTCTGGAGACCGTGAAGAAAGTGGGAAAGGTTGGCGCTAATGGTCAGAATGCTGCTGGGCC
C
TCTGCAGATTCTGTAACTGAAAATAAAATTGGTTCTCCACCCAAGACTCCTGTAAGTAATGTAGCAGCT
ACC
TCAGCTGGGCCCTCTAATGTTGGAACAGAGCTGAATTCTGTGCCTCAAAAATCCAGCCCATTTCTAA
CT
AGAGTACCAGTATATCCTCCGCATTCTGAAAACATTCAGTATTTTCAAGATCCAAGGACTCAGATACC
C
TTTGAAGTCCCACAGTACCCACAGACAGGATACTATCCACCACCTCCAACGGTACCAGCTGGTGTGGCT
CCC
TGTGTTCCTCGCTTTGTGAGGTCCAATAACGTTCCAGAGTCCTCCCTCCCACCTGCTTCCATGCCAT
AT
GCCGATCATTACAGTACATTTTCCCCTCGAGATCGAATGAATTCTTCTCCTTACCAGCCTCCTCCTCC
G
CAGCCGTATGGACCAGTTCCTCCAGTACCTTCTGGAATGTATGCTCCTGTGTACGACAGCAGGCGCATC
TGG
CGCCCACCTATGTACCAACGAGATGACATTATTAGAAGCAATTCTTTACCTCCAATGGATGTGATGC
AC
TCATCTGTCTATCAGACATCTTTGCGGGAAAGATATAACTCATTAGATGGATATTATTCGGTGGCTTG
T
CAGCCACCAAGTGAGCCAAGGACAACTGTGCCTTTACCAAGGGAACCTTGTGGTCATTTGAAGACCAGT
TGC
GAGGAGCAGATAAGAAGAAAGCCAGATCAGTGGGCACAGTACCACACTCAGAAAGCACCTCTTGTCT
CT
TCAACTCTTCCTGTGGCAACACAGTCACCAACACCACCTTCTCCTCTGTTCAGTGTAGACTTTCGTGC
G
GATTTCTCAGAGAGTGTGAGTGGTACAAAATTTGAAGAAGATCATCTTTCCCATTATTCTCCCTGGTCT
TGT
GGCACCATAGGCTCCTGTATAAATGCCATTGATTCAGAGCCCAAAGATGTCATTGCTAATTCAAATG
CT
GTGTTAATGGACCTGGACAGTGGTGATGTTAAGAGAAGAGTACATTTATTTGAAACCCAGAGAAGGAC
A
AAAGAAGAAGATCCAATAATTCCCTTTAGTGATGGACCCATCATCTCAAAATGGGGTGCGATTTCCAGA
TCT
TCCCGTACAGGTTACCATACCACAGATCCTGTCCAGGCCACTGCTTCCCAAGGAAGTGCGACTAAGC
CC
ATCAGTGTATCAGATTATGTCCCTTATGTCAATGCTGTTGATTCAAGGTGGAGTTCATATGGCAACGA
G
GCCACATCATCAGCACACTATGTTGAAAGGGACAGATTCATTGTTACTGATTTATCTGGTCATAGAAAG
CAT
TCCAGTACTGGGGACCTTTTGAGCCTTGAACTTCAGCAGGCCAAGAGCAACTCATTACTTCTTCAGA
GA
GAGGCCAATGCTTTGGCCATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACCTTAAA
C
CTTTTAAGCAAGGAAATTGAACTAAGAAATGGAGAGTTACAGAGTGATTATACAGAAGATGCAACAGAT
ACT
AAACCTGATAGGGATATCGAGTTAGAGCTTTCAGCACTTGATACTGATGAACCTGATGGACAAAGTG
AA
CCAATTGAAGAGATCTTGGACATACAGCTTGGTATCAGTTCTCAAAATGATCAGTTGCTAAATGGAAT
G
GCAGTGGAAAATGGGCATCCAGTACAGCAGCACCAAAAGGAGCCACCAAAGCAGAAGAAACAGAGTTTA
GGT
GAAGACCATGTGATTCTGGAGGAGCAAAAAACAATTCTGCCGGTAACTTCTTGCTTTAGCCAGCCAC
TC
CCAGTGTCTATTAGCAATGCAAGTTGCCTCCCCATCACCACATCTGTCAGTGCTGGCAACCTCATTCT
G
AAAACTCATGTTATGTCTGAAGATAAAAACGACTTTTTAAAACCTGTTGCAAATGGGAAGATGGTTAAC
AGC
TGA


Translation (1191 aa):
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFAL
L
QLVGAQ
VPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVASLNQSALSRPMQRKLVTLVNC
Q
LVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGP
AMQEEALKLVLLALED
G
SALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFK
VTKRDEDSSLMQLKEEFRSYEALRREH
D
AQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDK
LQSPESFAKSVQELTIVLQRTGDPANLNRL
R
PHLELLANIDPNP
DAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
Q
QGGCPRGTNCTFAHSQEELE
KYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVIGSTETTGKIV
P
STNGISNAENSVSQLISRSTDSTLRALETVKKVGKVGANGQNAAGPSADSVTE
NKIGSPPKTPVSNVAA
T
SAGPSNVGTELNSVPQKSSPFLTRVPVYPPHSENIQYFQDPRTQIPFEVPQYPQT
GYYPPPPTVPAGVA
P
CVPRFVRSNNVPESSLPPASMPYADHYSTFSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRI
W
RPPMYQRDDIIRSNSLPPMDVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPR
EPCGHLKTS
C
EEQIRRKPDQWAQYHTQKAPLVSSTLPVATQSPTPPSPLFSVDFRAD
FSESVSGTKFEEDHLSHYSPWS
C
GTIGSCINAIDSEPKDVIANSNAVLM
DLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGPIISKWGAISR
S
SRTGYHTTDPVQATASQGSATKPISVS
DYVPYVNAVDSRWSSYGNEATSSAHYVERDRFIVTDLSGHRK
H
SSTGDLLSLELQQ
AKSNSLLLQREANALAMQQKWNSLDEGRHLTLNLLSKEIELRNGELQSDYTEDATD
T
KPDRDIELELSALDTDEPDGQSEPIE
EILDIQLGISSQNDQLLNGMAVENGHPVQQHQKEPPKQKKQSL
G
EDHVI
LEEQKTILPVTSCFSQPLPVSISNASCLPITTSVSAGNLILKTHVMSEDKNDFLKPVANGKMVN
S




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser