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Report for CCDS43874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43874.1 Public Homo sapiens 9 RC3H2 24 110 108 CCDS HistoryNCBI Gene:54542Re-query CCDS DB by CCDS ID:43874.1Re-query CCDS DB by GeneID:54542See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43874.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357244.7 ENSP00000349783.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357244.7Link to Ensembl Protein Viewer:ENSP00000349783.2Re-query CCDS DB by Nucleotide ID:ENST00000357244Re-query CCDS DB by Protein ID:ENSP00000349783
Original member Current member EBI ENST00000373670.5 ENSP00000362774.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373670.5Link to Ensembl Protein Viewer:ENSP00000362774.1Re-query CCDS DB by Nucleotide ID:ENST00000373670Re-query CCDS DB by Protein ID:ENSP00000362774
Original member Current member NCBI NM_001100588.3 NP_001094058.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100588.3Link to Protein Sequence:NP_001094058.1Re-query CCDS DB by Nucleotide ID:NM_001100588Re-query CCDS DB by Protein ID:NP_001094058Link to BLAST:NP_001094058.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094058.1 1191 Q9HBD1-1 1191 100% 0 0

Chromosomal Locations for CCDS 43874.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122849627 122849822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122851081 122851229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122851323 122851436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122853952 122854086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122854185 122854266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122854531 122854615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122855184 122855397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122855732 122855878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122857923 122858093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122858669 122859102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122859917 122860131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122865349 122865657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122877471 122877583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122879755 122879873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122879993 122880125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122880594 122880794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122883204 122883379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122890312 122890545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122892909 122893026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122897279 122897509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3576 nt):
ATGCCTGTGCAGGCAGCTCAATGGACAGAATTTCTGTCCTGTCCAATCTGCTATAATGAATTTGATGAGA
ATGTGCACAAACCCATCAGTTTAGGTTGTTCACACACTGTTTGCAAGACCTGCTTGAATAAACTTCATCG
AAAAGCTTGTCCTTTTGACCAGACTGCCATCAACACAGATATTGATGTACTTCCTGTCAACTTCGCACTT
CTCCAGTTAGTTGGAGCCCAGGTACCAGATCATCAGTCAATTAAGTTAAGTAATCTAGGTGAGAATAAAC
ACTATGAGGTTGCAAAGAAATGCGTTGAGGATTTGGCACTCTACTTAAAACCACTAAGTGGAGGTAAAGG
TGTAGCTAGCTTGAACCAGAGTGCACTGAGCCGTCCAATGCAAAGGAAACTGGTGACACTTGTAAACTGT
CAACTGGTGGAGGAAGAAGGTCGTGTAAGAGCCATGCGAGCAGCTCGTTCCCTTGGAGAAAGAACTGTAA
CAGAACTGATATTACAGCACCAGAACCCTCAGCAGTTGTCTGCCAATCTATGGGCCGCTGTCAGGGCTCG
AGGATGCCAGTTTTTAGGGCCAGCTATGCAAGAAGAGGCCTTGAAGCTGGTGTTACTGGCATTAGAAGAT
GGTTCTGCCCTCTCAAGGAAAGTTCTGGTACTTTTTGTTGTGCAGAGACTAGAACCAAGATTTCCTCAGG
CATCAAAAACAAGTATTGGTCATGTTGTGCAACTACTGTATCGAGCTTCTTGTTTTAAGGTTACCAAAAG
AGATGAAGACTCTTCCCTAATGCAGCTGAAGGAGGAATTTCGGAGTTATGAAGCATTACGCAGAGAACAT
GATGCCCAAATTGTTCATATTGCCATGGAAGCAGGACTCCGTATTTCACCTGAACAGTGGTCCTCTCTTT
TGTATGGTGATTTGGCTCATAAATCACACATGCAGTCTATCATTGATAAGCTACAGTCTCCAGAGTCATT
TGCAAAGAGTGTCCAGGAATTGACAATTGTTTTGCAACGAACAGGTGACCCAGCTAACTTAAATAGACTG
AGGCCTCATTTAGAGCTTCTTGCAAACATAGACCCTAATCCAGACGCTGTTTCACCAACTTGGGAGCAGC
TGGAAAATGCAATGGTAGCTGTTAAAACAGTAGTTCATGGCCTTGTGGACTTCATACAAAATTATAGTAG
AAAAGGCCATGAGACCCCTCAGCCTCAGCCAAACAGCAAATACAAGACTAGCATGTGCCGAGATTTGCGA
CAGCAAGGGGGTTGTCCACGAGGAACAAATTGTACATTTGCCCATTCTCAGGAAGAGCTTGAAAAGTATC
GATTAAGGAACAAAAAGATCAATGCCACTGTAAGAACGTTTCCTCTTCTAAATAAAGTTGGTGTAAACAA
CACTGTCACAACCACAGCCGGAAATGTCATTTCTGTCATAGGAAGTACTGAAACAACAGGGAAAATTGTT
CCAAGTACAAACGGAATTTCAAATGCAGAAAACAGTGTTTCCCAGCTAATCTCACGTAGTACTGACAGTA
CCTTAAGAGCTCTGGAGACCGTGAAGAAAGTGGGAAAGGTTGGCGCTAATGGTCAGAATGCTGCTGGGCC
CTCTGCAGATTCTGTAACTGAAAATAAAATTGGTTCTCCACCCAAGACTCCTGTAAGTAATGTAGCAGCT
ACCTCAGCTGGGCCCTCTAATGTTGGAACAGAGCTGAATTCTGTGCCTCAAAAATCCAGCCCATTTCTAA
CTAGAGTACCAGTATATCCTCCGCATTCTGAAAACATTCAGTATTTTCAAGATCCAAGGACTCAGATACC
CTTTGAAGTCCCACAGTACCCACAGACAGGATACTATCCACCACCTCCAACGGTACCAGCTGGTGTGGCT
CCCTGTGTTCCTCGCTTTGTGAGGTCCAATAACGTTCCAGAGTCCTCCCTCCCACCTGCTTCCATGCCAT
ATGCCGATCATTACAGTACATTTTCCCCTCGAGATCGAATGAATTCTTCTCCTTACCAGCCTCCTCCTCC
GCAGCCGTATGGACCAGTTCCTCCAGTACCTTCTGGAATGTATGCTCCTGTGTACGACAGCAGGCGCATC
TGGCGCCCACCTATGTACCAACGAGATGACATTATTAGAAGCAATTCTTTACCTCCAATGGATGTGATGC
ACTCATCTGTCTATCAGACATCTTTGCGGGAAAGATATAACTCATTAGATGGATATTATTCGGTGGCTTG
TCAGCCACCAAGTGAGCCAAGGACAACTGTGCCTTTACCAAGGGAACCTTGTGGTCATTTGAAGACCAGT
TGCGAGGAGCAGATAAGAAGAAAGCCAGATCAGTGGGCACAGTACCACACTCAGAAAGCACCTCTTGTCT
CTTCAACTCTTCCTGTGGCAACACAGTCACCAACACCACCTTCTCCTCTGTTCAGTGTAGACTTTCGTGC
GGATTTCTCAGAGAGTGTGAGTGGTACAAAATTTGAAGAAGATCATCTTTCCCATTATTCTCCCTGGTCT
TGTGGCACCATAGGCTCCTGTATAAATGCCATTGATTCAGAGCCCAAAGATGTCATTGCTAATTCAAATG
CTGTGTTAATGGACCTGGACAGTGGTGATGTTAAGAGAAGAGTACATTTATTTGAAACCCAGAGAAGGAC
AAAAGAAGAAGATCCAATAATTCCCTTTAGTGATGGACCCATCATCTCAAAATGGGGTGCGATTTCCAGA
TCTTCCCGTACAGGTTACCATACCACAGATCCTGTCCAGGCCACTGCTTCCCAAGGAAGTGCGACTAAGC
CCATCAGTGTATCAGATTATGTCCCTTATGTCAATGCTGTTGATTCAAGGTGGAGTTCATATGGCAACGA
GGCCACATCATCAGCACACTATGTTGAAAGGGACAGATTCATTGTTACTGATTTATCTGGTCATAGAAAG
CATTCCAGTACTGGGGACCTTTTGAGCCTTGAACTTCAGCAGGCCAAGAGCAACTCATTACTTCTTCAGA
GAGAGGCCAATGCTTTGGCCATGCAACAGAAGTGGAATTCCCTGGATGAAGGCCGTCACCTTACCTTAAA
CCTTTTAAGCAAGGAAATTGAACTAAGAAATGGAGAGTTACAGAGTGATTATACAGAAGATGCAACAGAT
ACTAAACCTGATAGGGATATCGAGTTAGAGCTTTCAGCACTTGATACTGATGAACCTGATGGACAAAGTG
AACCAATTGAAGAGATCTTGGACATACAGCTTGGTATCAGTTCTCAAAATGATCAGTTGCTAAATGGAAT
GGCAGTGGAAAATGGGCATCCAGTACAGCAGCACCAAAAGGAGCCACCAAAGCAGAAGAAACAGAGTTTA
GGTGAAGACCATGTGATTCTGGAGGAGCAAAAAACAATTCTGCCGGTAACTTCTTGCTTTAGCCAGCCAC
TCCCAGTGTCTATTAGCAATGCAAGTTGCCTCCCCATCACCACATCTGTCAGTGCTGGCAACCTCATTCT
GAAAACTCATGTTATGTCTGAAGATAAAAACGACTTTTTAAAACCTGTTGCAAATGGGAAGATGGTTAAC
AGCTGA

Translation (1191 aa):
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTDIDVLPVNFAL
LQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVASLNQSALSRPMQRKLVTLVNC
QLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANLWAAVRARGCQFLGPAMQEEALKLVLLALED
GSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREH
DAQIVHIAMEAGLRISPEQWSSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRL
RPHLELLANIDPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVIGSTETTGKIV
PSTNGISNAENSVSQLISRSTDSTLRALETVKKVGKVGANGQNAAGPSADSVTENKIGSPPKTPVSNVAA
TSAGPSNVGTELNSVPQKSSPFLTRVPVYPPHSENIQYFQDPRTQIPFEVPQYPQTGYYPPPPTVPAGVA
PCVPRFVRSNNVPESSLPPASMPYADHYSTFSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRI
WRPPMYQRDDIIRSNSLPPMDVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPREPCGHLKTS
CEEQIRRKPDQWAQYHTQKAPLVSSTLPVATQSPTPPSPLFSVDFRADFSESVSGTKFEEDHLSHYSPWS
CGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGPIISKWGAISR
SSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEATSSAHYVERDRFIVTDLSGHRK
HSSTGDLLSLELQQAKSNSLLLQREANALAMQQKWNSLDEGRHLTLNLLSKEIELRNGELQSDYTEDATD
TKPDRDIELELSALDTDEPDGQSEPIEEILDIQLGISSQNDQLLNGMAVENGHPVQQHQKEPPKQKKQSL
GEDHVILEEQKTILPVTSCFSQPLPVSISNASCLPITTSVSAGNLILKTHVMSEDKNDFLKPVANGKMVN
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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