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Report for CCDS43886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43886.1 Public Homo sapiens 9 PHYHD1 24 110 108 CCDS HistoryNCBI Gene:254295Re-query CCDS DB by CCDS ID:43886.1Re-query CCDS DB by GeneID:254295See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000353176.9 ENSP00000340945.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000353176.9Link to Ensembl Protein Viewer:ENSP00000340945.5Re-query CCDS DB by Nucleotide ID:ENST00000353176Re-query CCDS DB by Protein ID:ENSP00000340945
Original member Current member EBI ENST00000421063.6 ENSP00000409928.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000421063.6Link to Ensembl Protein Viewer:ENSP00000409928.2Re-query CCDS DB by Nucleotide ID:ENST00000421063Re-query CCDS DB by Protein ID:ENSP00000409928
Original member Current member NCBI NM_001100877.1 NP_001094347.1 Accepted alive Link to Nucleotide Sequence:NM_001100877.1Link to Protein Sequence:NP_001094347.1Re-query CCDS DB by Nucleotide ID:NM_001100877Re-query CCDS DB by Protein ID:NP_001094347Link to BLAST:NP_001094347.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094347.1 270 Q5SRE7-2 270 100% 0 0

Chromosomal Locations for CCDS 43886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 128922324 128922356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128927038 128927196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128933782 128933857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128934011 128934058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128936448 128936503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128937757 128937778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128940369 128940497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128940599 128940715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128941445 128941571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 128941668 128941713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGGCCTGCCTGAGCCCCTCGCAGCTCCAGAAGTTCCAACAGGATGGATTCCTGGTGCTGGAAGGATTCT
TGTCTGCGGAAGAGTGTGTGGCCATGCAACAAAGGATTGGCGAGATAGTGGCTGAAATGGATGTTCCTCT
CCACTGCCGCACAGAATTCTCCACCCAGGAAGAGGAGCAGCTTCGAGCCCAGGGCAGCACAGACTATTTC
TTGAGCAGTGGTGACAAGATTCGATTCTTCTTTGAGAAAGGCGTTTTTGATGAGAAAGGAAATTTCCTGG
TCCCTCCGGAGAAATCCATCAACAAAATTGGCCACGCTCTGCACGCCCACGACCCCGTCTTCAAGAGCAT
CACACACTCCTTCAAGGTGCAGCAACCTCACTTTGGCGGTGAAGTCTCCCCTCATCAGGACGCCTCCTTC
CTGTACACGGAGCCCCTGGGCCGGGTGCTGGGCGTGTGGATCGCAGTGGAGGATGCCACGCTGGAGAACG
GCTGTCTCTGGTTCATCCCTGGCTCCCACACCAGTGGTGTGTCAAGAAGGATGGTCCGGGCCCCTGTTGG
CTCAGCGCCTGGTACCAGCTTCCTTGGGTCAGAGCCAGCCCGGGATAACAGCCTCTTTGTGCCCACCCCA
GTGCAGAGAGGGGCCCTGGTCCTCATCCATGGAGAAGTGGTACACAAGAGCAAGCAGAACCTCTCTGACC
GCTCGCGCCAGGCCTACACTTTCCACCTCATGGAGGCCTCTGGCACCACCTGGAGCCCGGAGAACTGGCT
CCAGCCAACAGCTGAACTGCCCTTTCCCCAACTGTACACCTAA

Translation (270 aa):
MACLSPSQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYF
LSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQQPHFGGEVSPHQDASF
LYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTP
VQRGALVLIHGEVVHKSKQNLSDRSRQAYTFHLMEASGTTWSPENWLQPTAELPFPQLYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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