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Report for CCDS4394.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4394.1 Public Homo sapiens 5 SFXN1 24 110 108 CCDS HistoryNCBI Gene:94081Re-query CCDS DB by CCDS ID:4394.1Re-query CCDS DB by GeneID:94081See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4394.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000321442.10 ENSP00000316905.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000321442.10Link to Ensembl Protein Viewer:ENSP00000316905.5Re-query CCDS DB by Nucleotide ID:ENST00000321442Re-query CCDS DB by Protein ID:ENSP00000316905
Original member Current member NCBI NM_001322977.2 NP_001309906.1 Accepted alive Link to Nucleotide Sequence:NM_001322977.2Link to Protein Sequence:NP_001309906.1Re-query CCDS DB by Nucleotide ID:NM_001322977Re-query CCDS DB by Protein ID:NP_001309906Link to BLAST:NP_001309906.1
Original member Current member NCBI NM_022754.7 NP_073591.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022754.7Link to Protein Sequence:NP_073591.2Re-query CCDS DB by Nucleotide ID:NM_022754Re-query CCDS DB by Protein ID:NP_073591Link to BLAST:NP_073591.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309906.1 322 Q9H9B4 322 100% 0 0
NP_073591.2 322 Q9H9B4 322 100% 0 0

Chromosomal Locations for CCDS 4394.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 175492104 175492267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175509032 175509202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175510109 175510207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175511451 175511526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175512111 175512196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175513463 175513590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175516614 175516663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175521919 175521968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175522375 175522422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 175526638 175526734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGTCTGGAGAACTACCACCAAACATTAACATCAAGGAACCTCGATGGGATCAAAGCACTTTCATTGGAC
GAGCCAATCATTTCTTCACTGTAACTGACCCCAGGAACATTCTGTTAACCAACGAACAACTCGAGAGTGC
GAGAAAAATAGTACATGATTACAGGCAAGGAATTGTTCCTCCTGGTCTTACAGAAAATGAATTGTGGAGA
GCAAAGTACATCTATGATTCAGCTTTTCATCCTGACACTGGTGAGAAGATGATTTTGATAGGAAGAATGT
CAGCCCAGGTTCCCATGAACATGACCATCACAGGTTGTATGATGACGTTTTACAGGACTACGCCGGCTGT
GCTGTTCTGGCAGTGGATTAACCAGTCCTTCAATGCCGTCGTCAATTACACCAACAGAAGTGGAGACGCA
CCCCTCACTGTCAATGAGTTGGGAACAGCTTACGTTTCTGCAACAACTGGTGCCGTAGCAACAGCTCTAG
GACTCAATGCATTGACCAAGCATGTCTCACCACTGATAGGACGTTTTGTTCCCTTTGCTGCCGTAGCTGC
TGCTAATTGCATTAATATTCCATTAATGAGGCAAAGGGAACTCAAAGTTGGCATTCCCGTCACGGATGAG
AATGGGAACCGCTTGGGGGAGTCGGCGAACGCTGCGAAACAAGCCATCACGCAAGTTGTCGTGTCCAGGA
TTCTCATGGCAGCCCCTGGCATGGCCATCCCTCCATTCATTATGAACACTTTGGAAAAGAAAGCCTTTTT
GAAGAGGTTCCCATGGATGAGTGCACCCATTCAAGTTGGGTTAGTTGGCTTCTGTTTGGTGTTTGCTACA
CCCCTGTGTTGTGCCCTGTTTCCTCAGAAAAGTTCCATGTCTGTGACAAGCTTGGAGGCCGAGTTGCAAG
CTAAGATCCAAGAGAGCCATCCTGAATTGCGACGCGTGTACTTCAATAAGGGATTGTAA

Translation (322 aa):
MSGELPPNINIKEPRWDQSTFIGRANHFFTVTDPRNILLTNEQLESARKIVHDYRQGIVPPGLTENELWR
AKYIYDSAFHPDTGEKMILIGRMSAQVPMNMTITGCMMTFYRTTPAVLFWQWINQSFNAVVNYTNRSGDA
PLTVNELGTAYVSATTGAVATALGLNALTKHVSPLIGRFVPFAAVAAANCINIPLMRQRELKVGIPVTDE
NGNRLGESANAAKQAITQVVVSRILMAAPGMAIPPFIMNTLEKKAFLKRFPWMSAPIQVGLVGFCLVFAT
PLCCALFPQKSSMSVTSLEAELQAKIQESHPELRRVYFNKGL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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