CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS43976.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
43976.1 |
Public |
Homo sapiens |
X |
PCDH19 |
24 |
110 |
108 |
|
Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 43976.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENST00000255531.8 |
ENSP00000255531.7 |
|
Accepted |
alive |
|
|
|
NCBI |
NM_001105243.2 |
NP_001098713.1 |
|
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001098713.1 |
1101 |
Q8TAB3-2 |
1101 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 43976.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3306 nt): ATGGAGTCGCTCCTGCTGCCGGTGCTGCTGCTGCTGGCCATACTGTGGACGCAGGCTGCCGCCCTCATTA ATCTCAAGTACTCGGTAGAAGAGGAGCAGCGCGCCGGGACGGTGATTGCCAACGTGGCCAAAGACGCGCG AGAGGCGGGCTTCGCGCTGGACCCCCGGCAGGCTTCAGCCTTTCGCGTGGTGTCCAACTCGGCTCCACAC CTAGTGGACATCAATCCCAGCTCTGGCCTGCTGGTCACCAAGCAGAAGATTGACCGTGATCTGCTGTGCC GCCAGAGCCCCAAGTGCATCATCTCGCTCGAGGTCATGTCCAGCTCAATGGAAATCTGCGTGATAAAGGT GGAGATCAAGGACCTGAACGACAATGCGCCCAGTTTCCCGGCAGCACAGATCGAGCTGGAGATCTCGGAG GCAGCCAGCCCTGGCACGCGCATCCCGCTGGACAGCGCTTACGATCCAGACTCAGGAAGCTTTGGCGTGC AGACTTACGAGCTCACGCCCAACGAGCTGTTCGGCCTGGAGATCAAGACGCGCGGCGACGGCTCCCGCTT TGCCGAACTCGTGGTGGAAAAGAGCCTGGACCGCGAGACGCAGTCGCACTACAGCTTCCGAATCACTGCG CTAGACGGTGGCGACCCGCCGCGCCTGGGCACCGTTGGCCTTAGTATCAAGGTGACCGACTCCAATGACA ACAACCCGGTGTTTAGCGAGTCCACCTACGCGGTGAGCGTGCCAGAAAACTCGCCTCCCAACACACCCGT CATCCGCCTCAACGCCAGCGATCCAGACGAGGGCACCAACGGCCAGGTGGTCTACTCCTTCTATGGCTAC GTCAACGACCGCACGCGCGAGCTCTTTCAGATCGACCCGCACAGTGGCCTGGTCACTGTCACTGGCGCTT TAGACTACGAAGAGGGGCACGTGTACGAACTGGACGTGCAGGCTAAGGACTTGGGGCCCAATTCCATCCC GGCACACTGCAAGGTCACCGTCAGCGTGCTGGACACCAATGACAATCCGCCGGTCATCAACCTGCTGTCA GTCAACAGTGAGCTTGTGGAGGTCAGCGAGAGCGCCCCCCCGGGCTACGTGATCGCCTTGGTGCGGGTGT CTGATCGCGACTCAGGCCTCAATGGACGTGTGCAGTGCCGTTTGCTGGGCAATGTGCCCTTTCGACTGCA GGAATATGAGAGCTTCTCCACTATTCTGGTGGACGGACGGCTGGACCGCGAGCAGCACGACCAATACAAC CTCACAATTCAGGCACGCGACGGCGGCGTGCCCATGCTGCAGAGTGCCAAGTCCTTTACCGTGCTCATCA CTGACGAAAATGACAACCACCCGCACTTTTCCAAGCCCTACTACCAGGTCATTGTGCAGGAGAACAACAC GCCTGGCGCCTATCTGCTCTCTGTGTCTGCTCGCGACCCCGACCTGGGTCTCAACGGCAGTGTCTCCTAC CAGATCGTGCCGTCGCAGGTGCGGGACATGCCTGTCTTCACCTATGTCTCCATCAATCCCAACTCAGGCG ACATCTACGCGCTGCGATCCTTTAACCACGAGCAGACCAAGGCGTTCGAATTCAAGGTGCTGGCCAAGGA CGGCGGCCTTCCCTCACTGCAAAGCAACGCTACGGTGCGGGTCATCATCCTCGACGTCAACGACAACACC CCGGTCATCACAGCCCCACCTCTGATTAACGGCACTGCCGAGGTCTACATACCCCGCAACTCTGGCATAG GCTACCTGGTGACTGTTGTCAAGGCAGAAGACTACGATGAGGGCGAAAATGGCCGAGTCACCTACGACAT GACCGAGGGCGACCGCGGCTTCTTTGAAATAGACCAGGTCAATGGCGAAGTCAGAACCACCCGCACCTTC GGGGAGAGCTCCAAGTCCTCCTATGAGCTTATCGTGGTGGCTCACGACCACGGCAAGACATCTCTCTCTG CCTCTGCTCTCGTCCTAATCTACTTGTCCCCTGCTCTCGATGCCCAAGAGTCAATGGGCTCTGTGAACTT GTCCTTGATTTTCATTATTGCCCTGGGCTCCATTGCGGGCATCCTCTTTGTAACTATGATCTTCGTGGCA ATCAAGTGCAAGCGAGACAACAAAGAGATCCGGACCTACAACTGCAGAATTGCTGAGTACTCCTATGGGC ATCAAAAGAAATCAAGCAAGAAGAAAAAAATCAGTAAGAATGACATCCGCCTGGTACCCCGGGATGTGGA GGAGACAGACAAGATGAACGTTGTCAGTTGCTCTTCCCTGACCTCCTCCCTCAACTATTTTGACTACCAC CAGCAGACGCTGCCCCTGGGCTGCCGCCGCTCTGAGAGCACTTTCCTGAATGTGGAGAACCAGAATACCC GCAACACCAGTGCTAACCACATCTACCATCACTCTTTCAACAGCCAGGGGCCCCAGCAGCCTGACCTGAT TATCAACGGTGTGCCTCTGCCTGAGACTGAAAACTATTCTTTTGACTCCAACTACGTGAATAGCCGAGCC CATTTAATCAAGAGCAGCTCCACCTTCAAGGACTTAGAGGGCAACAGCCTGAAGGATAGTGGACATGAGG AGAGTGACCAAACTGACAGTGAGCATGATGTCCAGCGGAGCCTGTATTGTGATACTGCTGTCAACGATGT GCTGAACACCAGTGTGACCTCCATGGGATCTCAGATGCCTGATCATGATCAGAATGAAGGATTTCATTGC CGGGAAGAATGCCGGATTCTTGGCCACTCTGACAGGTGCTGGATGCCCCGGAACCCCATGCCCATCCGTT CCAAGTCCCCTGAGCATGTGAGGAACATCATCGCGCTGTCTATTGAAGCTACTGCTGCTGATGTCGAGGC TTATGACGACTGCGGCCCCACCAAACGGACTTTCGCAACCTTTGGGAAAGATGTCAGCGACCACCCGGCT GAGGAGAGGCCTACCCTGAAAGGCAAGAGGACTGTCGATGTGACCATCTGCAGCCCCAAGGTCAACAGCG TTATCCGGGAGGCAGGCAATGGCTGTGAGGCGATTAGCCCTGTCACCTCCCCCCTCCACCTCAAGAGCTC TCTGCCCACCAAGCCTTCCGTGTCTTACACCATTGCCCTGGCTCCCCCAGCCCGTGATCTGGAGCAGTAT GTCAACAATGTCAACAATGGCCCTACTCGTCCCTCTGAAGCTGAGCCCCGTGGAGCTGATAGCGAGAAAG TCATGCATGAGGTCAGCCCCATTCTGAAGGAAGGTCGCAACAAAGAGTCCCCTGGTGTGAAGCGTCTGAA GGATATCGTTCTCTAA
Translation (1101 aa): MESLLLPVLLLLAILWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPH LVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISE AASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA LDGGDPPRLGTVGLSIKVTDSNDNNPVFSESTYAVSVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGY VNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPVINLLS VNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYN LTIQARDGGVPMLQSAKSFTVLITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDLGLNGSVSY QIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNT PVITAPPLINGTAEVYIPRNSGIGYLVTVVKAEDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF GESSKSSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVA IKCKRDNKEIRTYNCRIAEYSYGHQKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYH QQTLPLGCRRSESTFLNVENQNTRNTSANHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRA HLIKSSSTFKDLEGNSLKDSGHEESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHC REECRILGHSDRCWMPRNPMPIRSKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSDHPA EERPTLKGKRTVDVTICSPKVNSVIREAGNGCEAISPVTSPLHLKSSLPTKPSVSYTIALAPPARDLEQY VNNVNNGPTRPSEAEPRGADSEKVMHEVSPILKEGRNKESPGVKRLKDIVL
|