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Report for CCDS4400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4400.1 Public Homo sapiens 5 ARL10 24 110 108 CCDS HistoryNCBI Gene:285598Re-query CCDS DB by CCDS ID:4400.1Re-query CCDS DB by GeneID:285598See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4400.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310389.6 ENSP00000308496.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000310389.6Link to Ensembl Protein Viewer:ENSP00000308496.5Re-query CCDS DB by Nucleotide ID:ENST00000310389Re-query CCDS DB by Protein ID:ENSP00000308496
Original member Current member NCBI NM_173664.6 NP_775935.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173664.6Link to Protein Sequence:NP_775935.1Re-query CCDS DB by Nucleotide ID:NM_173664Re-query CCDS DB by Protein ID:NP_775935Link to BLAST:NP_775935.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775935.1 244 Q8N8L6 244 100% 0 0

Chromosomal Locations for CCDS 4400.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176365564 176365746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176366380 176366581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176368807 176368982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176371722 176371895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGGCGCCGCGGCCGCTGGGCCCCTTGGTGCTGGCGCTGGGCGGCGCCGCGGCGGTGCTGGGCTCGGTGC
TCTTCATCCTCTGGAAGACCTACTTCGGCCGCGGCCGAGAGCGGCGCTGGGACCGGGGAGAGGCCTGGTG
GGGCGCGGAGGCTGCCCGCCTCCCCGAGTGGGACGAGTGGGACCCCGAGGACGAGGAGGACGAGGAGCCG
GCGCTGGAGGAGCTGGAACAGCGCGAGGTGCTGGTGCTGGGGCTGGATGGCGCAGGCAAGAGCACGTTCC
TGCGCGTGTTGTCGGGGAAGCCACCGCTGGAAGGCCACATCCCCACCTGGGGCTTCAACTCCGTGCGTCT
GCCCACCAAGGACTTTGAGGTGGACCTGCTAGAAATTGGGGGCAGCCAGAACCTGCGCTTCTACTGGAAG
GAGTTTGTGAGCGAGGTGGATGTGCTGGTGTTTGTGGTGGACTCGGCTGACCGACTGCGGCTGCCCTGGG
CCCGACAGGAGCTGCACAAGCTGCTGGACAAGGACCCTGACCTGCCTGTCGTCGTGGTGGCCAACAAGCA
GGACCTGAGCGAGGCCATGAGTATGGGGGAGCTGCAGCGGGAGCTGGGTCTACAGGCTATCGATAACCAG
CGGGAGGTTTTCCTCTTGGCAGCCAGCATTGCCCCTGCAGGACCCACCTTTGAAGAGCCTGGCACCGTGC
ACATCTGGAAACTGCTCTTGGAGCTCCTCTCCTAG

Translation (244 aa):
MAPRPLGPLVLALGGAAAVLGSVLFILWKTYFGRGRERRWDRGEAWWGAEAARLPEWDEWDPEDEEDEEP
ALEELEQREVLVLGLDGAGKSTFLRVLSGKPPLEGHIPTWGFNSVRLPTKDFEVDLLEIGGSQNLRFYWK
EFVSEVDVLVFVVDSADRLRLPWARQELHKLLDKDPDLPVVVVANKQDLSEAMSMGELQRELGLQAIDNQ
REVFLLAASIAPAGPTFEEPGTVHIWKLLLELLS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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