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Report for CCDS44003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44003.1 Public Homo sapiens X SLC9A6 24 110 108 CCDS HistoryNCBI Gene:10479Re-query CCDS DB by CCDS ID:44003.1Re-query CCDS DB by GeneID:10479See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370695.8 ENSP00000359729.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370695.8Link to Ensembl Protein Viewer:ENSP00000359729.4Re-query CCDS DB by Nucleotide ID:ENST00000370695Re-query CCDS DB by Protein ID:ENSP00000359729
Original member Current member NCBI NM_001042537.2 NP_001036002.1 Accepted alive Link to Nucleotide Sequence:NM_001042537.2Link to Protein Sequence:NP_001036002.1Re-query CCDS DB by Nucleotide ID:NM_001042537Re-query CCDS DB by Protein ID:NP_001036002Link to BLAST:NP_001036002.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036002.1 701 Q92581-2 701 100% 0 0

Chromosomal Locations for CCDS 44003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135985503 135985827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135994786 135994985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135998108 135998185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135998482 135998558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135998856 135998968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136002108 136002213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136010442 136010583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136012949 136013054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136013349 136013437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136016645 136016758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136022586 136022697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136024330 136024483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136030132 136030162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136033414 136033493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136040076 136040181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 136044452 136044724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGCTCGGCGCGGCTGGCGGCGGGCACCCCTCCGCCGTGGCGTCGGCAGCAGTCCCCGAGCCCGCAGGC
TCATGCGGCCCCTTTGGTTGCTCCTCGCAGTGGGCGTCTTTGACTGGGCAGGGGCTTCGGACGGCGGCGG
CGGAGAGGCTAGAGCCATGGACGAGGAGATCGTGTCCGAGAAGCAAGCCGAGGAGAGCCACCGGCAGGAC
AGCGCCAACCTGCTCATCTTCATCCTGCTGCTCACCCTCACCATTCTCACAATCTGGCTCTTCAAGCACC
GCCGGGCCCGCTTCCTGCACGAAACCGGCCTGGCTATGATTTATGGTCTTTTGGTGGGCCTTGTGCTTCG
GTATGGCATTCATGTTCCGAGTGATGTAAATAATGTGACCCTGAGCTGTGAAGTGCAGTCAAGTCCAACT
ACCTTACTGGTAAATGTTAGTGGAAAATTTTATGAGTATATGCTGAAAGGAGAGATTAGTTCACATGAAC
TCAATAATGTTCAAGATAATGAAATGCTTAGAAAGGTTACTTTTGATCCAGAAGTATTTTTCAACATATT
ACTTCCTCCTATCATATTTTATGCAGGTTATAGCCTGAAAAGGAGACATTTTTTTCGAAATCTTGGGTCT
ATCCTAGCATACGCTTTTCTTGGAACAGCAATTTCTTGTTTCGTTATTGGGTCAATAATGTATGGCTGTG
TAACGCTGATGAAGGTAACGGGACAACTTGCAGGAGATTTTTACTTTACAGATTGCCTACTGTTTGGTGC
CATTGTATCAGCAACTGATCCAGTGACTGTTCTTGCTATATTCCACGAGCTTCAAGTTGATGTTGAACTC
TATGCACTTCTTTTTGGTGAAAGTGTCCTCAATGATGCTGTTGCCATAGTGCTGTCCTCCTCAATAGTGG
CATACCAGCCAGCTGGAGACAACAGTCACACCTTTGATGTCACAGCGATGTTCAAGTCTATTGGGATCTT
CCTTGGAATCTTCAGTGGATCTTTTGCAATGGGTGCTGCTACTGGAGTGGTGACAGCTTTAGTGACAAAG
TTCACCAAATTACGGGAGTTCCAGTTGTTGGAGACAGGCCTGTTCTTCTTGATGTCCTGGAGTACCTTCC
TCTTGGCTGAAGCATGGGGCTTCACAGGTGTAGTTGCAGTATTGTTTTGTGGCATCACACAAGCACATTA
TACGTATAATAATTTGTCCACGGAGTCTCAGCATAGAACTAAACAGTTGTTTGAGCTTCTCAATTTCTTG
GCAGAGAATTTCATCTTCTCCTACATGGGGCTGACACTGTTCACCTTCCAGAACCATGTCTTTAACCCAA
CATTTGTAGTAGGAGCATTTGTTGCTATTTTCTTGGGAAGAGCTGCCAATATTTACCCCTTGTCCCTCTT
ACTTAATTTGGGTAGAAGAAGTAAGATTGGATCAAATTTTCAACACATGATGATGTTTGCTGGCCTTCGT
GGTGCAATGGCATTTGCCTTGGCCATTCGAGATACTGCCACTTATGCACGGCAAATGATGTTCAGCACCA
CGCTTCTGATTGTGTTTTTTACCGTGTGGGTATTTGGTGGTGGCACCACTGCAATGCTGTCATGCTTGCA
TATCAGGGTTGGTGTTGATTCAGACCAAGAACACTTGGGTGTTCCTGAAAATGAAAGGAGAACTACCAAA
GCAGAGAGTGCTTGGCTTTTCCGGATGTGGTACAACTTTGATCATAACTATCTGAAGCCTCTGCTGACCC
ACAGCGGGCCTCCGCTGACAACAACACTCCCTGCCTGCTGTGGACCCATCGCCAGGTGCCTCACCAGCCC
CCAGGCTTACGAAAACCAGGAACAGTTGAAAGATGATGATTCTGATCTTATTCTCAATGATGGTGACATC
AGTTTGACATATGGAGATTCTACTGTGAACACTGAACCGGCCACATCCAGCGCCCCAAGGAGATTTATGG
GAAACAGTTCTGAAGATGCCTTGGATCGGGAGCTTGCATTTGGGGACCATGAACTGGTCATTCGAGGAAC
ACGCCTGGTTCTTCCAATGGATGATTCTGAACCCCCGCTAAATTTGTTAGATAATACGAGACATGGTCCA
GCCTAA

Translation (701 aa):
MARRGWRRAPLRRGVGSSPRARRLMRPLWLLLAVGVFDWAGASDGGGGEARAMDEEIVSEKQAEESHRQD
SANLLIFILLLTLTILTIWLFKHRRARFLHETGLAMIYGLLVGLVLRYGIHVPSDVNNVTLSCEVQSSPT
TLLVNVSGKFYEYMLKGEISSHELNNVQDNEMLRKVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLGS
ILAYAFLGTAISCFVIGSIMYGCVTLMKVTGQLAGDFYFTDCLLFGAIVSATDPVTVLAIFHELQVDVEL
YALLFGESVLNDAVAIVLSSSIVAYQPAGDNSHTFDVTAMFKSIGIFLGIFSGSFAMGAATGVVTALVTK
FTKLREFQLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCGITQAHYTYNNLSTESQHRTKQLFELLNFL
AENFIFSYMGLTLFTFQNHVFNPTFVVGAFVAIFLGRAANIYPLSLLLNLGRRSKIGSNFQHMMMFAGLR
GAMAFALAIRDTATYARQMMFSTTLLIVFFTVWVFGGGTTAMLSCLHIRVGVDSDQEHLGVPENERRTTK
AESAWLFRMWYNFDHNYLKPLLTHSGPPLTTTLPACCGPIARCLTSPQAYENQEQLKDDDSDLILNDGDI
SLTYGDSTVNTEPATSSAPRRFMGNSSEDALDRELAFGDHELVIRGTRLVLPMDDSEPPLNLLDNTRHGP
A


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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