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Report for CCDS4401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4401.1 Public Homo sapiens 5 HIGD2A 24 110 108 CCDS HistoryNCBI Gene:192286Re-query CCDS DB by CCDS ID:4401.1Re-query CCDS DB by GeneID:192286See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4401.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274787.3 ENSP00000274787.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274787.3Link to Ensembl Protein Viewer:ENSP00000274787.2Re-query CCDS DB by Nucleotide ID:ENST00000274787Re-query CCDS DB by Protein ID:ENSP00000274787
Original member Current member NCBI NM_138820.4 NP_620175.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138820.4Link to Protein Sequence:NP_620175.1Re-query CCDS DB by Nucleotide ID:NM_138820Re-query CCDS DB by Protein ID:NP_620175Link to BLAST:NP_620175.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620175.1 106 Q9BW72 106 100% 0 0

Chromosomal Locations for CCDS 4401.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176388820 176388973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176389331 176389497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGGCGACTCCCGGCCCTGTGATTCCGGAGGTCCCCTTTGAACCATCGAAGCCTCCAGTCATTGAGGGGC
TGAGCCCCACTGTTTACAGGAATCCAGAGAGTTTCAAGGAAAAGTTCGTTCGCAAGACCCGCGAGAACCC
GGTGGTACCCATAGGTTGCCTGGCCACGGCGGCCGCCCTCACCTACGGCCTCTACTCCTTCCACCGGGGC
AACAGCCAGCGCTCTCAGCTCATGATGCGCACCCGGATCGCCGCCCAGGGTTTCACGGTCGCAGCCATCT
TGCTGGGTCTGGCTGTCACTGCTATGAAGTCTCGACCCTAA

Translation (106 aa):
MATPGPVIPEVPFEPSKPPVIEGLSPTVYRNPESFKEKFVRKTRENPVVPIGCLATAAALTYGLYSFHRG
NSQRSQLMMRTRIAAQGFTVAAILLGLAVTAMKSRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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