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Report for CCDS4404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4404.1 Public Homo sapiens 5 RNF44 24 110 108 CCDS HistoryNCBI Gene:22838Re-query CCDS DB by CCDS ID:4404.1Re-query CCDS DB by GeneID:22838See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274811.9 ENSP00000274811.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274811.9Link to Ensembl Protein Viewer:ENSP00000274811.4Re-query CCDS DB by Nucleotide ID:ENST00000274811Re-query CCDS DB by Protein ID:ENSP00000274811
Original member Current member NCBI NM_014901.5 NP_055716.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014901.5Link to Protein Sequence:NP_055716.1Re-query CCDS DB by Nucleotide ID:NM_014901Re-query CCDS DB by Protein ID:NP_055716Link to BLAST:NP_055716.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055716.1 432 Q7L0R7-1 432 100% 0 0

Chromosomal Locations for CCDS 4404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176529028 176529090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176529288 176529387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176529523 176529644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176529731 176529818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176530082 176530206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176530582 176530743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176530848 176531021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176531463 176531630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176532004 176532193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176532366 176532472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGCGACCATGGGCTCTGGCAGTGACTAGGTGGCCACCCTCCGCCCCCGTGGGCCAGCGGCGATTCTCTG
CGGGACCTGGCAGCACCCCGGGCCAGCTCTGGGGAAGCCCTGGCCTCGAGGGCCCCCTGGCCAGCCCGCC
TGCCCGGGATGAGCGCTTACCCTCCCAGCAGCCGCCGTCCCGACCTCCACACCTCCCCGTAGAGGAGCGC
CGAGCCTCGGCTCCTGCCGGCGGGAGCCCCCGAATGCTGCACCCAGCCACCCAGCAGAGCCCGTTCATGG
TTGATCTCCACGAGCAGGTGCACCAGGGACCTGTCCCTCTGTCCTACACGGTCACCACAGTGACGACCCA
AGGCTTCCCCTTGCCTACAGGCCAGCACATCCCTGGCTGCAGTGCCCAGCAGCTCCCAGCATGCTCCGTG
ATGTTCAGTGGGCAGCATTACCCCCTCTGCTGCCTCCCGCCCCCGCTTATCCAGGCGTGCACCATGCAGC
AGCTGCCTGTGCCCTATCAGGCCTACCCCCACCTCATCTCCAGTGACCACTACATCCTGCACCCCCCACC
ACCGGCCCCACCCCCCCAGCCCACCCACATGGCGCCCCTGGGGCAGTTTGTGTCTCTGCAGACCCAGCAC
CCTCGGATGCCCCTCCAGCGGCTCGACAACGACGTGGACCTGCGTGGGGACCAGCCCTCCCTGGGCAGCT
TCACCTACTCCACCTCTGCGCCTGGCCCAGCCCTTTCCCCGTCGGTGCCCCTGCACTACCTGCCCCACGA
TCCGCTGCACCAGGAGCTGTCCTTTGGTGTGCCATATTCTCACATGATGCCACGGAGACTGAGCACCCAG
AGATACCGCCTGCAGCAGCCACTGCCCCCGCCGCCCCCACCCCCACCCCCACCACCCTACTACCCCAGCT
TCCTGCCCTACTTCCTCTCGATGCTGCCAATGTCACCAACAGCAATGGGGCCCACCATCAGCCTGGACCT
GGACGTGGATGATGTGGAGATGGAGAACTATGAGGCCCTCCTGAACCTGGCCGAGCGGCTGGGAGATGCC
AAGCCCCGGGGTCTCACCAAAGCAGACATAGAGCAGCTCCCGTCGTACCGCTTTAACCCGGACAGCCATC
AGTCGGAGCAGACGCTGTGTGTGGTCTGCTTCAGTGACTTCGAGGCGCGGCAGCTGCTCCGAGTCCTCCC
CTGCAACCATGAGTTCCACACCAAGTGTGTTGACAAGTGGTTGAAGGCCAACCGGACGTGTCCCATCTGC
CGGGCCGACGCCTCCGAGGTGCCCAGGGAGGCTGAGTGA

Translation (432 aa):
MRPWALAVTRWPPSAPVGQRRFSAGPGSTPGQLWGSPGLEGPLASPPARDERLPSQQPPSRPPHLPVEER
RASAPAGGSPRMLHPATQQSPFMVDLHEQVHQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQLPACSV
MFSGQHYPLCCLPPPLIQACTMQQLPVPYQAYPHLISSDHYILHPPPPAPPPQPTHMAPLGQFVSLQTQH
PRMPLQRLDNDVDLRGDQPSLGSFTYSTSAPGPALSPSVPLHYLPHDPLHQELSFGVPYSHMMPRRLSTQ
RYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLPMSPTAMGPTISLDLDVDDVEMENYEALLNLAERLGDA
KPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRVLPCNHEFHTKCVDKWLKANRTCPIC
RADASEVPREAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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