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Report for CCDS44089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44089.1 Public Homo sapiens 1 MTFR1L 24 110 108 CCDS HistoryNCBI Gene:56181Re-query CCDS DB by CCDS ID:44089.1Re-query CCDS DB by GeneID:56181See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44089.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000466284.1 ENSP00000434751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000466284.1Link to Ensembl Protein Viewer:ENSP00000434751.1Re-query CCDS DB by Nucleotide ID:ENST00000466284Re-query CCDS DB by Protein ID:ENSP00000434751
Original member Current member EBI ENST00000474295.5 ENSP00000435461.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000474295.5Link to Ensembl Protein Viewer:ENSP00000435461.1Re-query CCDS DB by Nucleotide ID:ENST00000474295Re-query CCDS DB by Protein ID:ENSP00000435461
Original member Current member NCBI NM_001099627.2 NP_001093097.1 Accepted alive Link to Nucleotide Sequence:NM_001099627.2Link to Protein Sequence:NP_001093097.1Re-query CCDS DB by Nucleotide ID:NM_001099627Re-query CCDS DB by Protein ID:NP_001093097Link to BLAST:NP_001093097.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093097.1 205 Q9H019-2 205 100% 0 0

Chromosomal Locations for CCDS 44089.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 25823105 25823128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25823644 25823748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25826302 25826411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25826615 25826826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25829618 25829784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTCAGGAATGGAAGCCACTGTGACCATCCCAATCTGGCAAAACAAGCCACATGGGGCTGCTCGAAGTG
TAGTAAGAAGAATTGGGACCAACCTACCCTTGAAGCCGTGTGCCCGGGCGTCCTTTGAGACCCTGCCCAA
CATCTCTGACCTGTGTTTGAGAGATGTGCCCCCAGTCCCTACCCTGGCTGACATCGCCTGGATTGCTGCG
GATGAAGAGGAGACATATGCCCGGGTCAGGAGTGATACGCGCCCCCTGAGGCACACCTGGAAACCCAGCC
CTCTGATTGTCATGCAGCGCAATGCCTCTGTTCCCAACCTGCGTGGGTCCGAGGAGAGGCTTCTGGCCCT
GAAGAAGCCAGCTCTGCCAGCCCTAAGCCGCACTACTGAGCTGCAGGACGAGCTGAGCCACTTGCGCAGC
CAGATTGCAAAGATAGTGGCAGCTGATGCAGTGACATCACCGAGGAGACAGAGGTGGAGGTCCCTGAGCT
TCCATCAGTCCCCCTGCTTTGTTCTGCCAGCCCTGAATGTTGCAAACCAGAACACAAAGCTGCCTGCAGT
TCGTCTGAAGAGGATGACTGCGTCTCTTTGTCCAAGGCCAGCAGCTTTGCAGACATGA

Translation (205 aa):
MSGMEATVTIPIWQNKPHGAARSVVRRIGTNLPLKPCARASFETLPNISDLCLRDVPPVPTLADIAWIAA
DEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRS
QIAKIVAADAVTSPRRQRWRSLSFHQSPCFVLPALNVANQNTKLPAVRLKRMTASLCPRPAALQT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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