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Report for CCDS44159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44159.1 Public Homo sapiens 1 DEPDC1 24 110 108 CCDS HistoryNCBI Gene:55635Re-query CCDS DB by CCDS ID:44159.1Re-query CCDS DB by GeneID:55635See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44159.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456315.7 ENSP00000412292.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000456315.7Link to Ensembl Protein Viewer:ENSP00000412292.2Re-query CCDS DB by Nucleotide ID:ENST00000456315Re-query CCDS DB by Protein ID:ENSP00000412292
Original member Current member NCBI NM_001114120.3 NP_001107592.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114120.3Link to Protein Sequence:NP_001107592.1Re-query CCDS DB by Nucleotide ID:NM_001114120Re-query CCDS DB by Protein ID:NP_001107592Link to BLAST:NP_001107592.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107592.1 811 Q5TB30-5 811 100% 0 0

Chromosomal Locations for CCDS 44159.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 68476932 68477069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68477787 68477972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68479144 68479320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68481440 68481612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68482046 68482897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68483950 68484090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68486937 68486984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68488374 68488504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68488916 68489034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68489452 68489608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68494430 68494695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 68496952 68496999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2436 nt):
ATGGAGAGTCAGGGTGTGCCTCCCGGGCCTTATCGGGCCACCAAGCTGTGGAATGAAGTTACCACATCTT
TTCGAGCAGGAATGCCTCTAAGAAAACACAGACAACACTTTAAAAAATATGGCAATTGTTTCACAGCAGG
AGAAGCAGTGGATTGGCTTTATGACCTATTAAGAAATAATAGCAATTTTGGTCCTGAAGTTACAAGGCAA
CAGACTATCCAACTGTTGAGGAAATTTCTTAAGAATCATGTAATTGAAGATATCAAAGGGAGGTGGGGAT
CAGAAAATGTTGATGATAACAACCAGCTCTTCAGATTTCCTGCAACTTCGCCACTTAAAACTCTACCACG
AAGGTATCCAGAATTGAGAAAAAACAACATAGAGAACTTTTCCAAAGATAAAGATAGCATTTTTAAATTA
CGAAACTTATCTCGTAGAACTCCTAAAAGGCATGGATTACATTTATCTCAGGAAAATGGCGAGAAAATAA
AGCATGAAATAATCAATGAAGATCAAGAAAATGCAATTGATAATAGAGAACTAAGCCAGGAAGATGTTGA
AGAAGTTTGGAGATATGTTATTCTGATCTACCTGCAAACCATTTTAGGTGTGCCATCCCTAGAAGAAGTC
ATAAATCCAAAACAAGTAATTCCCCAATATATAATGTACAACATGGCCAATACAAGTAAACGTGGAGTAG
TTATACTACAAAACAAATCAGATGACCTCCCTCACTGGGTATTATCTGCCATGAAGTGCCTAGCAAATTG
GCCAAGAAGCAATGATATGAATAATCCAACTTATGTTGGATTTGAACGAGATGTATTCAGAACAATCGCA
GATTATTTTCTAGATCTCCCTGAACCTCTACTTACTTTTGAATATTACGAATTATTTGTAAACATTTTGG
TTGTTTGTGGCTACATCACAGTTTCAGATAGATCCAGTGGGATACATAAAATTCAAGATGATCCACAGTC
TTCAAAATTCCTTCACTTAAACAATTTGAATTCCTTCAAATCAACTGAGTGCCTTCTTCTCAGTCTGCTT
CATAGAGAAAAAAACAAAGAAGAATCAGATTCTACTGAGAGACTACAGATAAGCAATCCAGGATTTCAAG
AAAGATGTGCTAAGAAAATGCAGCTAGTTAATTTAAGAAACAGAAGAGTGAGTGCTAATGACATAATGGG
AGGAAGTTGTCATAATTTAATAGGGTTAAGTAATATGCATGATCTATCCTCTAACAGCAAACCAAGGTGC
TGTTCTTTGGAAGGAATTGTAGATGTGCCAGGGAATTCAAGTAAAGAGGCATCCAGTGTCTTTCATCAAT
CTTTTCCGAACATAGAAGGACAAAATAATAAACTGTTTTTAGAGTCTAAGCCCAAACAGGAATTCCTGTT
GAATCTTCATTCAGAGGAAAATATTCAAAAGCCATTCAGTGCTGGTTTTAAGAGAACCTCTACTTTGACT
GTTCAAGACCAAGAGGAGTTGTGTAATGGGAAATGCAAGTCAAAACAGCTTTGTAGGTCTCAGAGTTTGC
TTTTAAGAAGTAGTACAAGAAGGAATAGTTATATCAATACACCAGTGGCTGAAATTATCATGAAACCAAA
TGTTGGACAAGGCAGCACAAGTGTGCAAACAGCTATGGAAAGTGAACTCGGAGAGTCTAGTGCCACAATC
AATAAAAGACTCTGCAAAAGTACAATAGAACTTTCAGAAAATTCTTTACTTCCAGCTTCTTCTATGTTGA
CTGGCACACAAAGCTTGCTGCAACCTCATTTAGAGAGGGTTGCCATCGATGCTCTACAGTTATGTTGTTT
GTTACTTCCCCCACCAAATCGTAGAAAGCTTCAACTTTTAATGCGTATGATTTCCCGAATGAGTCAAAAT
GTTGATATGCCCAAACTTCATGATGCAATGGGTACGAGGTCACTGATGATACATACCTTTTCTCGATGTG
TGTTATGCTGTGCTGAAGAAGTGGATCTTGATGAGCTTCTTGCTGGAAGATTAGTTTCTTTCTTAATGGA
TCATCATCAGGAAATTCTTCAAGTACCCTCTTACTTACAGACTGCAGTGGAAAAACATCTTGACTACTTA
AAAAAGGGACATATTGAAAATCCTGGAGATGGACTATTTGCTCCTTTGCCAACTTACTCATACTGTAAGC
AGATTAGTGCTCAGGAGTTTGATGAGCAAAAAGTTTCTACCTCTCAAGCTGCAATTGCAGAACTTTTAGA
AAATATTATTAAAAACAGGAGTTTACCTCTAAAGGAGAAAAGAAAAAAACTAAAACAGTTTCAGAAGGAA
TATCCTTTGATATATCAGAAAAGATTTCCAACCACGGAGAGTGAAGCAGCACTTTTTGGTGACAAACCTA
CAATCAAGCAACCAATGCTGATTTTAAGAAAACCAAAGTTCCGTAGTCTAAGATAA

Translation (811 aa):
MESQGVPPGPYRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNNSNFGPEVTRQ
QTIQLLRKFLKNHVIEDIKGRWGSENVDDNNQLFRFPATSPLKTLPRRYPELRKNNIENFSKDKDSIFKL
RNLSRRTPKRHGLHLSQENGEKIKHEIINEDQENAIDNRELSQEDVEEVWRYVILIYLQTILGVPSLEEV
INPKQVIPQYIMYNMANTSKRGVVILQNKSDDLPHWVLSAMKCLANWPRSNDMNNPTYVGFERDVFRTIA
DYFLDLPEPLLTFEYYELFVNILVVCGYITVSDRSSGIHKIQDDPQSSKFLHLNNLNSFKSTECLLLSLL
HREKNKEESDSTERLQISNPGFQERCAKKMQLVNLRNRRVSANDIMGGSCHNLIGLSNMHDLSSNSKPRC
CSLEGIVDVPGNSSKEASSVFHQSFPNIEGQNNKLFLESKPKQEFLLNLHSEENIQKPFSAGFKRTSTLT
VQDQEELCNGKCKSKQLCRSQSLLLRSSTRRNSYINTPVAEIIMKPNVGQGSTSVQTAMESELGESSATI
NKRLCKSTIELSENSLLPASSMLTGTQSLLQPHLERVAIDALQLCCLLLPPPNRRKLQLLMRMISRMSQN
VDMPKLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVSFLMDHHQEILQVPSYLQTAVEKHLDYL
KKGHIENPGDGLFAPLPTYSYCKQISAQEFDEQKVSTSQAAIAELLENIIKNRSLPLKEKRKKLKQFQKE
YPLIYQKRFPTTESEAALFGDKPTIKQPMLILRKPKFRSLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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