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Report for CCDS44320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44320.1 Public Homo sapiens 1 FBXO28 24 110 108 CCDS HistoryNCBI Gene:23219Re-query CCDS DB by CCDS ID:44320.1Re-query CCDS DB by GeneID:23219See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44320.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000424254.6 ENSP00000416888.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000424254.6Link to Ensembl Protein Viewer:ENSP00000416888.2Re-query CCDS DB by Nucleotide ID:ENST00000424254Re-query CCDS DB by Protein ID:ENSP00000416888
Original member Current member NCBI NM_001136115.3 NP_001129587.1 Accepted alive Link to Nucleotide Sequence:NM_001136115.3Link to Protein Sequence:NP_001129587.1Re-query CCDS DB by Nucleotide ID:NM_001136115Re-query CCDS DB by Protein ID:NP_001129587Link to BLAST:NP_001129587.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129587.1 179 Q9NVF7-2 179 100% 0 0

Chromosomal Locations for CCDS 44320.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 224114130 224114396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224130472 224130581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224134074 224134212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224157352 224157375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (540 nt):
ATGGCGGCAGCGGCGGAGGAGCGGATGGCAGAGGAAGGAGGCGGCGGCCAAGGCGACGGCGGTTCCTCTT
TGGCCTCCGGCTCTACCCAGCGACAGCCTCCACCGCCCGCGCCACAGCACCCGCAGCCGGGGTCCCAGGC
GCTCCCAGCCCCCGCGCTGGCTCCGGACCAGCTGCCTCAAAACAACACGCTTGTGGCGCTGCCCATCGTA
GCCATCGAGAACATCCTCAGCTTTATGTCCTACGACGAAATTAGCCAGCTCCGCCTGGTTTGTAAAAGAA
TGGACTTGGTCTGCCAGAGAATGTTGAATCAGGGATTTCTGAAAGTGGAGAGGTACCATAATCTATGTCA
GAAACAAGTTAAAGCACAACTCCCAAGGAGAGAGTCAGAAAGGAGAAACCATTCATTAGCTCGTCATGCA
GACATTCTTGCTGCTGTTGAAACAAGGCTGTCACTATTAAATATGACTTTCATGAAATATGTGGATTCCA
ATCTCTGTTGCTTCATCCCAGGAAAGTTCCAGGACCGTCTGCAGCCCTAA

Translation (179 aa):
MAAAAEERMAEEGGGGQGDGGSSLASGSTQRQPPPPAPQHPQPGSQALPAPALAPDQLPQNNTLVALPIV
AIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQGFLKVERYHNLCQKQVKAQLPRRESERRNHSLARHA
DILAAVETRLSLLNMTFMKYVDSNLCCFIPGKFQDRLQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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