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Report for CCDS44333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44333.1 Public Homo sapiens 1 TRIM67 24 110 108 CCDS HistoryNCBI Gene:440730Re-query CCDS DB by CCDS ID:44333.1Re-query CCDS DB by GeneID:440730See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44333.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366653.6 ENSP00000355613.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366653.6Link to Ensembl Protein Viewer:ENSP00000355613.5Re-query CCDS DB by Nucleotide ID:ENST00000366653Re-query CCDS DB by Protein ID:ENSP00000355613
Original member Current member NCBI NM_001004342.5 NP_001004342.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004342.5Link to Protein Sequence:NP_001004342.3Re-query CCDS DB by Nucleotide ID:NM_001004342Re-query CCDS DB by Protein ID:NP_001004342Link to BLAST:NP_001004342.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004342.3 783 Q6ZTA4-3 783 100% 0 0

Chromosomal Locations for CCDS 44333.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 231162970 231164013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231197371 231197466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231199047 231199169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231200148 231200258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231201358 231201517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231203867 231204012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231206652 231206790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231208947 231209250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231213815 231213977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 231215375 231215440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2352 nt):
ATGGAGGAAGAGCTGAAGTGTCCCGTGTGCGGCTCTCTGTTTCGGGAGCCTATCATCCTGCCCTGTTCCC
ACAATGTCTGCCTGCCTTGCGCTCGCACCATCGCGGTGCAGACCCCGGACGGTGAGCAGCACCTGCCCCA
GCCGCTCCTGCTTTCCCGGGGATCGGGGCTGCAGGCGGGCGCCGCCGCCGCTGCCTCTCTGGAGCACGAC
GCTGCGGCTGGCCCGGCCTGCGGCGGTGCAGGCGGGAGTGCAGCTGGCGGCCTCGGCGGCGGTGCGGGAG
GTGGCGGAGACCACGCGGACAAGCTCAGCTTGTACAGCGAGACAGACAGCGGCTACGGGTCCTACACCCC
GAGCCTCAAGTCCCCCAACGGGGTTCGCGTGCTGCCCATGGTGCCCGCACCACCCGGCTCCTCGGCTGCG
GCGGCTCGGGGTGCCGCCTGCTCCTCGCTGTCCTCGTCTTCGAGCTCCATCACGTGCCCGCAGTGCCACC
GCAGCGCATCCCTGGACCACCGCGGCCTGCGCGGCTTCCAGCGCAACCGGCTGCTCGAGGCCATCGTGCA
GCGGTACCAGCAGGGCCGCGGGGCCGTGCCGGGGACGTCTGCAGCCGCGGCGGTGGCCATCTGCCAGCTG
TGCGACCGCACCCCGCCAGAGCCAGCAGCCACGCTCTGCGAGCAGTGCGACGTCCTCTACTGCTCTGCCT
GCCAGCTCAAGTGCCATCCATCCCGGGGACCCTTCGCCAAGCATCGCCTGGTGCAGCCGCCGCCGCCGCC
GCCGCCGCCCGCCGAGGCAGCCTCCGGGCCCACTGGCACCGCCCAGGGCGCCCCCAGCGGAGGCGGCGGC
TGCAAGAGCCCGGGAGGCGCGGGGGCGGGGGCGACTGGGGGCAGCACGGCCCGCAAGTTCCCCACGTGTC
CCGAGCATGAAATGGAGAACTACAGCATGTACTGCGTGAGCTGTCGAACCCCGGTGTGTTATCTGTGCCT
GGAGGAGGGCCGGCACGCCAAGCACGAGGTGAAGCCGCTGGGGGCCATGTGGAAGCAGCACAAGGCACAA
CTATCTCAGGCCTTAAATGGAGTTTCAGATAAGGCAAAGGAAGCAAAGGAGTTTCTGGTTCAGCTAAAGA
ACATATTGCAGCAGATCCAGGAAAACGGACTGGACTACGAAGCCTGCCTCGTTGCTCAGTGTGATGCCCT
TGTGGATGCTTTAACTCGTCAGAAAGCCAAGCTGCTCACCAAGGTGACTAAAGAGAGGGAACACAAGTTG
AAGATGGTTTGGGACCAGATCAATCACTGCACATTGAAGCTGCGTCAGTCCACCGGACTGATGGAGTACT
GCCTGGAGGTGATCAAGGAGAACGACCCCTCCGGGTTCTTACAGATCTCAGATGCTCTGATCAAGCGCGT
CCAGGTGTCTCAGGAGCAGTGGGTCAAAGGCGCCCTGGAGCCGAAAGTGTCTGCGGAGTTTGATCTGACT
TTGGACAGCGAGCCGCTGCTGCAGGCCATCCACCAGCTGGACTTCATTCAGATGAAATGTAGGGTGCCAC
CCGTCCCCCTACTGCAGCTGGAGAAATGCTGCACCCGTAACAACAGCGTCACGCTGGCCTGGAGGATGCC
ACCCTTCACCCACAGCCCCGTGGACGGCTACATCCTGGAGCTGGACGACGGTGCCGGGGGACAGTTCCGG
GAAGTGTACGTCGGTAAGGAGACTTTGTGTACCATCGACGGTCTTCACTTCAACAGCACCTACAACGCCC
GAGTCAAAGCTTTCAACTCTTCTGGTGTCGGGCCTTACAGTAAAACTGTCGTCCTGCAGACATCCGATGT
GGCCTGGTTCACATTTGACCCCAACTCTGGGCATCGGGACATCATTTTATCCAATGACAACCAGACAGCC
ACCTGCAGCAGCTATGACGACCGGGTGGTGCTGGGCACAGCTGCGTTCTCCAAGGGCGTGCACTACTGGG
AGCTGCACGTGGACCGGTACGACAACCACCCAGACCCCGCCTTCGGGGTGGCCAGGGCCAGCGTGGTCAA
GGACATGATGCTGGGCAAGGATGACAAGGCCTGGGCCATGTATGTGGACAACAACCGCAGCTGGTTCATG
CACTGCAACTCCCACACCAACAGGACGGAAGGTGGCGTGTGCAAGGGGGCCACCGTGGGCGTGCTGCTGG
ACCTGAATAAGCACACTCTCACCTTCTTCATCAACGGGCAGCAGCAGGGCCCCACAGCCTTCAGCCACGT
GGACGGGGTCTTCATGCCAGCCCTCAGCCTCAACCGCAACGTGCAGGTCACCCTGCACACAGGATTGGAA
GTGCCGACTAACCTGGGGCGGCCAAAGCTGTCAGGCAATTAG

Translation (783 aa):
MEEELKCPVCGSLFREPIILPCSHNVCLPCARTIAVQTPDGEQHLPQPLLLSRGSGLQAGAAAAASLEHD
AAAGPACGGAGGSAAGGLGGGAGGGGDHADKLSLYSETDSGYGSYTPSLKSPNGVRVLPMVPAPPGSSAA
AARGAACSSLSSSSSSITCPQCHRSASLDHRGLRGFQRNRLLEAIVQRYQQGRGAVPGTSAAAAVAICQL
CDRTPPEPAATLCEQCDVLYCSACQLKCHPSRGPFAKHRLVQPPPPPPPPAEAASGPTGTAQGAPSGGGG
CKSPGGAGAGATGGSTARKFPTCPEHEMENYSMYCVSCRTPVCYLCLEEGRHAKHEVKPLGAMWKQHKAQ
LSQALNGVSDKAKEAKEFLVQLKNILQQIQENGLDYEACLVAQCDALVDALTRQKAKLLTKVTKEREHKL
KMVWDQINHCTLKLRQSTGLMEYCLEVIKENDPSGFLQISDALIKRVQVSQEQWVKGALEPKVSAEFDLT
LDSEPLLQAIHQLDFIQMKCRVPPVPLLQLEKCCTRNNSVTLAWRMPPFTHSPVDGYILELDDGAGGQFR
EVYVGKETLCTIDGLHFNSTYNARVKAFNSSGVGPYSKTVVLQTSDVAWFTFDPNSGHRDIILSNDNQTA
TCSSYDDRVVLGTAAFSKGVHYWELHVDRYDNHPDPAFGVARASVVKDMMLGKDDKAWAMYVDNNRSWFM
HCNSHTNRTEGGVCKGATVGVLLDLNKHTLTFFINGQQQGPTAFSHVDGVFMPALSLNRNVQVTLHTGLE
VPTNLGRPKLSGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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