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Report for CCDS44359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44359.1 Public Homo sapiens 10 SEC61A2 24 110 108 CCDS HistoryNCBI Gene:55176Re-query CCDS DB by CCDS ID:44359.1Re-query CCDS DB by GeneID:55176See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 44359.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379033.7 ENSP00000368319.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379033.7Link to Ensembl Protein Viewer:ENSP00000368319.3Re-query CCDS DB by Nucleotide ID:ENST00000379033Re-query CCDS DB by Protein ID:ENSP00000368319
Original member Current member NCBI NM_001142628.1 NP_001136100.1 Accepted alive Link to Nucleotide Sequence:NM_001142628.1Link to Protein Sequence:NP_001136100.1Re-query CCDS DB by Nucleotide ID:NM_001142628Re-query CCDS DB by Protein ID:NP_001136100Link to BLAST:NP_001136100.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136100.1 454 Q9H9S3-3 454 100% 0 0

Chromosomal Locations for CCDS 44359.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 12129788 12129794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12133241 12133308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12143117 12143195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12149595 12149726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12149852 12149961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12155778 12155931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12156907 12157067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12157908 12158105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12160930 12161121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12162213 12162289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 12164268 12164454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGGCATCAAATTTTTAGAAGTTATCAAACCATTCTGTGCAGTTCTACCAGAAATTCAGAAACCGGAAA
GGAAAATCCCACTGTTTGGAATCATGTCATCAGATTCTGCAGATCCTTTCTACTGGATGAGAGTTATTCT
GGCTTCCAATAGAGGAACTTTAATGGAATTGGGTATCTCCCCAATTGTAACATCTGGTTTGATTATGCAG
TTGTTAGCTGGAGCCAAAATCATTGAAGTTGGAGATACACCGAAAGATAGAGCTTTATTCAATGGAGCCC
AGAAACTGTTTGGTATGATCATTACCATTGGGCAAGCCATTGTGTATGTCATGACGGGGATGTATGGGGA
CCCTGCAGAAATGGGTGCCGGAATCTGTCTCCTGATCATCATTCAGTTGTTTGTTGCTGGTTTGATTGTG
CTGCTGTTAGATGAGCTGCTACAGAAGGGTTACGGCTTGGGGTCTGGGATTTCCCTCTTTATTGCCACCA
ACATCTGTGAGACCATTGTCTGGAAGGCCTTTAGTCCCACTACCATTAACACTGGCAGAGGTACTGAGTT
TGAGGGTGCAGTCATAGCTCTGTTCCATTTGTTGGCCACCAGGACGGACAAAGTCCGAGCTTTACGGGAG
GCTTTTTATCGGCAGAACTTACCCAATCTCATGAACCTCATTGCTACAGTTTTTGTGTTTGCTGTTGTTA
TATATTTCCAAGGATTTCGCGTTGATCTGCCCATTAAGTCGGCCCGTTACCGAGGACAGTACAGCAGCTA
CCCCATCAAACTCTTCTACACCTCCAACATCCCCATCATCCTCCAGTCGGCCCTGGTGTCCAACCTGTAT
GTTATTTCCCAGATGCTGTCTGTTCGATTTAGTGGCAACTTTTTAGTAAATTTACTAGGACAGTGGGCCG
ATGTCAGTGGGGGAGGACCCGCACGTTCTTACCCAGTTGGAGGCCTTTGTTACTATCTTTCTCCTCCTGA
GTCCATGGGCGCCATCTTTGAGGATCCTGTCCATGTCGTTGTTTATATCATCTTCATGTTGGGGTCATGT
GCATTCTTCTCTAAGACATGGATTGAAGTGTCTGGTTCCTCAGCCAAAGATGTAGCTAAACAGCTGAAAG
AACAGCAGATGGTAATGAGGGGCCACCGAGATACCTCTATGGTTCATGAGCTTAATAGGTACATCCCCAC
CGCAGCTGCGTTTGGCGGTTTGTGCATTGGCGCCCTGTCAGTGCTGGCTGACTTCCTGGGGGCCATTGGA
TCTGGCACTGGAATTCTGCTAGCAGTCACTATTATTTACCAGTATTTTGAAATATTTGTTAAAGAACAGG
CCGAAGTTGGTGGGATGGGTGCTTTGTTTTTCTAA

Translation (454 aa):
MGIKFLEVIKPFCAVLPEIQKPERKIPLFGIMSSDSADPFYWMRVILASNRGTLMELGISPIVTSGLIMQ
LLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIV
LLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALRE
AFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLY
VISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSC
AFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIG
SGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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