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Report for CCDS44457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44457.1 Public Homo sapiens 10 LIPM 24 110 108 CCDS HistoryNCBI Gene:340654Re-query CCDS DB by CCDS ID:44457.1Re-query CCDS DB by GeneID:340654See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44457.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404743.9 ENSP00000383901.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404743.9Link to Ensembl Protein Viewer:ENSP00000383901.3Re-query CCDS DB by Nucleotide ID:ENST00000404743Re-query CCDS DB by Protein ID:ENSP00000383901
Original member Current member NCBI NM_001128215.1 NP_001121687.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001128215.1Link to Protein Sequence:NP_001121687.1Re-query CCDS DB by Nucleotide ID:NM_001128215Re-query CCDS DB by Protein ID:NP_001121687Link to BLAST:NP_001121687.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001121687.1 423 Q5VYY2-1 423 100% 0 0

Chromosomal Locations for CCDS 44457.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88802897 88803043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88808298 88808415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88813097 88813295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88814530 88814639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88815088 88815224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88815357 88815503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88816816 88816887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88817825 88817896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88820232 88820501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1272 nt):
ATGTTGGAAACCTTGTCAAGACAGTGGATTGTCTCACACAGAATGGAAATGTGGCTTCTGATTCTGGTGG
CGTATATGTTCCAGAGAAATGTGAATTCAGTACATATGCCAACTAAAGCTGTGGACCCAGAAGCATTCAT
GAATATTAGTGAAATCATCCAACATCAAGGCTATCCCTGTGAGGAATATGAAGTCGCAACTGAAGATGGG
TATATCCTTTCTGTTAACAGGATTCCTCGAGGCCTAGTGCAACCTAAGAAGACAGGTTCCAGGCCTGTGG
TGTTACTGCAGCATGGCCTAGTTGGAGGTGCTAGCAACTGGATTTCCAACCTGCCCAACAATAGCCTGGG
CTTCATTCTGGCAGATGCTGGTTTTGACGTGTGGATGGGGAACAGCAGGGGAAACGCCTGGTCTCGAAAA
CACAAGACACTCTCCATAGACCAAGATGAGTTCTGGGCTTTCAGTTATGATGAGATGGCTAGGTTTGACC
TTCCTGCAGTGATAAACTTTATTTTGCAGAAAACGGGCCAGGAAAAGATCTATTATGTCGGCTATTCACA
GGGCACCACCATGGGCTTTATTGCATTTTCCACCATGCCAGAGCTGGCTCAGAAAATCAAAATGTATTTT
GCTTTAGCACCCATAGCCACTGTTAAGCATGCAAAAAGCCCCGGGACCAAATTTTTGTTGCTGCCAGATA
TGATGATCAAGGGATTGTTTGGCAAAAAAGAATTTCTGTATCAGACCAGATTTCTCAGACAACTTGTTAT
TTACCTTTGTGGCCAGGTGATTCTTGATCAGATTTGTAGTAATATCATGTTACTTCTGGGTGGATTCAAC
ACCAACAATATGAACATGAGCCGAGCAAGTGTATATGCTGCCCACACTCTTGCTGGAACATCTGTGCAAA
ATATTCTACACTGGAGCCAGGCAGTGAATTCTGGTGAACTCCGGGCATTTGACTGGGGGAGTGAGACCAA
AAATCTGGAAAAATGCAATCAGCCAACTCCTGTAAGGTACAGAGTCAGAGATATGACGGTCCCTACAGCA
ATGTGGACAGGAGGTCAGGACTGGCTTTCAAATCCAGAAGACGTGAAAATGCTGCTCTCTGAGGTGACCA
ACCTCATCTACCATAAGAATATTCCTGAATGGGCTCACGTGGATTTCATCTGGGGTTTGGATGCTCCTCA
CCGTATGTACAATGAAATCATCCATCTGATGCAGCAGGAGGAGACCAACCTTTCCCAGGGACGGTGTGAG
GCCGTATTGTGA

Translation (423 aa):
MLETLSRQWIVSHRMEMWLLILVAYMFQRNVNSVHMPTKAVDPEAFMNISEIIQHQGYPCEEYEVATEDG
YILSVNRIPRGLVQPKKTGSRPVVLLQHGLVGGASNWISNLPNNSLGFILADAGFDVWMGNSRGNAWSRK
HKTLSIDQDEFWAFSYDEMARFDLPAVINFILQKTGQEKIYYVGYSQGTTMGFIAFSTMPELAQKIKMYF
ALAPIATVKHAKSPGTKFLLLPDMMIKGLFGKKEFLYQTRFLRQLVIYLCGQVILDQICSNIMLLLGGFN
TNNMNMSRASVYAAHTLAGTSVQNILHWSQAVNSGELRAFDWGSETKNLEKCNQPTPVRYRVRDMTVPTA
MWTGGQDWLSNPEDVKMLLSEVTNLIYHKNIPEWAHVDFIWGLDAPHRMYNEIIHLMQQEETNLSQGRCE
AVL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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