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Report for CCDS44680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44680.1 Public Homo sapiens 11 XRRA1 24 110 108 CCDS HistoryNCBI Gene:143570Re-query CCDS DB by CCDS ID:44680.1Re-query CCDS DB by GeneID:143570See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340360.10 ENSP00000339918.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340360.10Link to Ensembl Protein Viewer:ENSP00000339918.6Re-query CCDS DB by Nucleotide ID:ENST00000340360Re-query CCDS DB by Protein ID:ENSP00000339918
Original member Current member NCBI NM_182969.4 NP_892014.1 Accepted alive Link to Nucleotide Sequence:NM_182969.4Link to Protein Sequence:NP_892014.1Re-query CCDS DB by Nucleotide ID:NM_182969Re-query CCDS DB by Protein ID:NP_892014Link to BLAST:NP_892014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_892014.1 792 Q6P2D8-1 792 100% 0 0

Chromosomal Locations for CCDS 44680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 74843200 74843453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74843854 74843959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74844168 74844283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74845073 74845271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74848115 74848462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74851088 74851203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74851989 74852082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74859158 74859283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74862981 74863021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74906239 74906456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74907145 74907273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74921214 74921347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74927391 74927488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74930300 74930372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74933825 74933872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74936884 74937068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 74940785 74940878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGGCCTTCTCAGGAATCTACAAGCTGGATGATGGGAAGCCTTACCTGAACAACTGCTTCCCAGCCAGAA
ATCTGCTTCGCGTGCCGGAGGAAGGCCAAGGACACTGGTTAGTGGTTCAGAAAGGTAACCTCAAGAAGAA
GCCCAAGGGTTTGGTTGGAGCACAAGCTGAACGTCGGGAAAGCCTGAAGGCGACTTCTTTTGAGTTCAAG
GGGAAGAAAGAGTCTCGGCGGGAAAATCAGGTGGACCTTCCTGGACATATCCTGGACCAGGCTTTTCTGC
TGAAGCACCACTGTGTGAGGAAGCCATCAGATCTGTGCACCATTAATGCCAAGGAAAATGACTTCAAGCA
TTTTCATTCTGTGATTTATATCAATGCCTCAGAAAACCTGCTGCCTCTAGAGGCATTTCACACGTTTCCA
GCCCTAAAGGAACTGGATCTCGCATTTAATGGCATCAAAACTATCTACGTGAAATATGGAGACTTTAAGT
TATTAGAATTCTTGGACCTTTCCTTCAACAGCCTGACTGTGGAGGCCATCTGTGATTTGGGGATTCTGCC
ACACCTCCGTGTCCTGCTCCTCACAGGCAATGGCCTTACCTCCCTGCCGCCCAATTTGGCCGTCGCAGAA
CAGGAGGCATCTGTAACATCGCTGACAAGCAAGAGGTACATCCTGAGGTTCCCAGCGCTGGAGACACTGA
TGCTGGATGACAACAGACTCTCCAACCCCAGTTGCTTTGCCAGCCTGGCTGGGCTCAGGAGACTGAAGAA
GTTAAGCTTGGATGAAAACAGGATTATCAGGATCCCATACCTACAGCAAGTTCAGCTCTATGACGAGTCA
GTAGACTGGAATGGAGGCAGGGGAAGTCCCCATAAAGAGCCCCAATTCATGCTGCAGTCCAAGCCAAGGA
TGCTTGAGGACTCAGATGAGCAACTGGATTATACTGTACTGCCCATGAAAAAGGATGTTGACCGGACAGA
GGTTGTGTTTTCATCTTACCCTGGATTTTCAACCTCAGAGACAACCAAGATATGTTCACTTCCTCCCATA
TTCGAGATCCTTCCTGTGAAGTCACTGAAGGCCAGGAACCAGACGCTGGCCCCACCCTTCCCAGAGCTGA
GATACCTTAGCCTGGCCTACAACAAGATCGCAAAAGAGGATGCTGTCCTACCAGTAGCTCTCTTCCCATC
TCTCTGCGAGTTCGTCTTTCATAACAACCCTCTGGTGGCCCATACACGAGGGGTCCCTCCACTGCTGAAG
AGCTTCCTCCAGGAGCGACTGGGAATCCACTTAATTCGAAGGAAGATAGTAAAGCCTAAGCATCATGTTT
TGATGTCTCGGAAGGAATCATGGAAGGTGAAAAGCGAAATCCCAAAGGTGCCGAAGCAGCCTCTGGTGCT
CCATCACCCGCGCATGACGACAACCAAGTCTCCCTCAAAGGATATGCTAGAGCCAGAGGCAGAGCTGGCT
GAAGATCTGCCCACTACCAAAAGCACTTCTGTGGAGTCAGAGATGCCCACTGAGAACCTGGAAGGCCATT
CCCCGTCTTGCCGGACCTTCGTGCCACTGCCTCCCATCTGCTCCAACTCCACTGTGCATAGTGAAGAGAC
CCTGTCCCACCTGAGTGACACAACTGTCCGCCTCAGCCCAGAGCGCCCATCAGATGAGGACTCCAAGAGC
ACAGAGTCCATCTTCCTGACCCAGGTGAGTGAACTGCCTTCCTCCGTCATCCATAAGGATGATTTAGAGT
TAAAGGAGAAAGACCAAAAGAAACCACCAACGGCACCCAGAGAGGTGAAAGGGACTCGGAGGAAACTCCC
AACTGCCTTCCTTCCCAGCAAGTACCACGGCTATGAAGAACTGCTGACAGCCAAGCCTGATCCAGCCTTC
ATTGAGCCAAAGGGAATCCAGAAGAATGCACAAGCCCTGCAACAAATGCTGAAGCACCCACTCCTGTGCC
ACTCCTCCAAGCCCAAGCTGGACACTCTTCAGAAACCCTATGTTCACAAAGAGAAACGGGCCCAGAGAAT
CCCGATTCCACCCCCAAAGAAGACTAGAGCCCAACTTCTGGATGACATCTTCATTCGCTTGCGGGATCCC
CGGAACATTACAGAGGCTCCACTAGGTGCTGTCCTGCACCAGTGGACAGAACGGCGGCTGGTGAACCACA
AGCAGTACCTGGAGGCCAAGAGGCTGTTGAAGGAGTTCCAGGCACGTTACCGGCAGCTGGTGAGTGGCTC
TCTGCGCACAGTGTTCGGGACTACCCCGCTCCCCATGGCCTGCCCAGCGCTGAGTGAGAGCCAGCCCAAG
TTCGGCCACTTCCTCGAGTTCATGGATGAGTTCTGCCAGGAGCCCACAGCCAGTGACTCACAAGGCTAG

Translation (792 aa):
MAFSGIYKLDDGKPYLNNCFPARNLLRVPEEGQGHWLVVQKGNLKKKPKGLVGAQAERRESLKATSFEFK
GKKESRRENQVDLPGHILDQAFLLKHHCVRKPSDLCTINAKENDFKHFHSVIYINASENLLPLEAFHTFP
ALKELDLAFNGIKTIYVKYGDFKLLEFLDLSFNSLTVEAICDLGILPHLRVLLLTGNGLTSLPPNLAVAE
QEASVTSLTSKRYILRFPALETLMLDDNRLSNPSCFASLAGLRRLKKLSLDENRIIRIPYLQQVQLYDES
VDWNGGRGSPHKEPQFMLQSKPRMLEDSDEQLDYTVLPMKKDVDRTEVVFSSYPGFSTSETTKICSLPPI
FEILPVKSLKARNQTLAPPFPELRYLSLAYNKIAKEDAVLPVALFPSLCEFVFHNNPLVAHTRGVPPLLK
SFLQERLGIHLIRRKIVKPKHHVLMSRKESWKVKSEIPKVPKQPLVLHHPRMTTTKSPSKDMLEPEAELA
EDLPTTKSTSVESEMPTENLEGHSPSCRTFVPLPPICSNSTVHSEETLSHLSDTTVRLSPERPSDEDSKS
TESIFLTQVSELPSSVIHKDDLELKEKDQKKPPTAPREVKGTRRKLPTAFLPSKYHGYEELLTAKPDPAF
IEPKGIQKNAQALQQMLKHPLLCHSSKPKLDTLQKPYVHKEKRAQRIPIPPPKKTRAQLLDDIFIRLRDP
RNITEAPLGAVLHQWTERRLVNHKQYLEAKRLLKEFQARYRQLVSGSLRTVFGTTPLPMACPALSESQPK
FGHFLEFMDEFCQEPTASDSQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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