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Report for CCDS44765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44765.1 Public Homo sapiens 11 PATE4 24 110 108 CCDS HistoryNCBI Gene:399968Re-query CCDS DB by CCDS ID:44765.1Re-query CCDS DB by GeneID:399968See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44765.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457514.3 ENSP00000411439.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000457514.3Link to Ensembl Protein Viewer:ENSP00000411439.2Re-query CCDS DB by Nucleotide ID:ENST00000457514Re-query CCDS DB by Protein ID:ENSP00000411439
Original member Current member NCBI NM_001144874.1 NP_001138346.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144874.1Link to Protein Sequence:NP_001138346.1Re-query CCDS DB by Nucleotide ID:NM_001144874Re-query CCDS DB by Protein ID:NP_001138346Link to BLAST:NP_001138346.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138346.1 98 P0C8F1 98 100% 0 0

Chromosomal Locations for CCDS 44765.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 125833360 125833417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125837868 125837984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 125838306 125838427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGAGGAAAATGAACACACTGCTCCTTGTGAGCTTATCTTTTCTCTACCTCAAAGAGGTTATGGGTCTGA
AGTGTAATACCTGCATATACACAGAAGGATGGAAGTGTATGGCAGGCCGAGGCACTTGCATTGCAAAAGA
AAATGAGTTATGTTCAACAACAGCCTATTTCAGGGGAGACAAACATATGTACTCAACACATATGTGTAAG
TATAAGTGCCGGGAAGAGGAGTCCTCCAAAAGAGGCCTGTTGAGAGTGACACTGTGCTGTGACAGAAACT
TCTGTAATGTCTTCTAA

Translation (98 aa):
MRKMNTLLLVSLSFLYLKEVMGLKCNTCIYTEGWKCMAGRGTCIAKENELCSTTAYFRGDKHMYSTHMCK
YKCREEESSKRGLLRVTLCCDRNFCNVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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