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Report for CCDS44781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44781.1 Public Homo sapiens 12 CCDC77 24 110 108 CCDS HistoryNCBI Gene:84318Re-query CCDS DB by CCDS ID:44781.1Re-query CCDS DB by GeneID:84318See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44781.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422000.5 ENSP00000391870.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000422000.5Link to Ensembl Protein Viewer:ENSP00000391870.1Re-query CCDS DB by Nucleotide ID:ENST00000422000Re-query CCDS DB by Protein ID:ENSP00000391870
Original member Current member EBI ENST00000412006.6 ENSP00000412925.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412006.6Link to Ensembl Protein Viewer:ENSP00000412925.2Re-query CCDS DB by Nucleotide ID:ENST00000412006Re-query CCDS DB by Protein ID:ENSP00000412925
Original member Current member EBI ENST00000540180.5 ENSP00000440554.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540180.5Link to Ensembl Protein Viewer:ENSP00000440554.1Re-query CCDS DB by Nucleotide ID:ENST00000540180Re-query CCDS DB by Protein ID:ENSP00000440554
Original member Current member NCBI NM_001130146.2 NP_001123618.1 Accepted alive Link to Nucleotide Sequence:NM_001130146.2Link to Protein Sequence:NP_001123618.1Re-query CCDS DB by Nucleotide ID:NM_001130146Re-query CCDS DB by Protein ID:NP_001123618Link to BLAST:NP_001123618.1
Original member Current member NCBI NM_001130147.2 NP_001123619.1 Accepted alive Link to Nucleotide Sequence:NM_001130147.2Link to Protein Sequence:NP_001123619.1Re-query CCDS DB by Nucleotide ID:NM_001130147Re-query CCDS DB by Protein ID:NP_001123619Link to BLAST:NP_001123619.1
Original member Current member NCBI NM_001130148.2 NP_001123620.1 Accepted alive Link to Nucleotide Sequence:NM_001130148.2Link to Protein Sequence:NP_001123620.1Re-query CCDS DB by Nucleotide ID:NM_001130148Re-query CCDS DB by Protein ID:NP_001123620Link to BLAST:NP_001123620.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123618.1 456 Q9BR77-2 456 100% 0 0
NP_001123619.1 456 Q9BR77-2 456 100% 0 0
NP_001123620.1 456 Q9BR77-2 456 100% 0 0

Chromosomal Locations for CCDS 44781.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 411805 411978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 418494 418636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 428769 428865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 430664 430736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 431866 431954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 433174 433322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 438335 438554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 440617 440742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 440844 440996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 441774 441920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGCAGATTCACTGGAGTCAACCCCCTTGCCTTCCCCCGAAGATCGTCTGGCCAAACTCCATCCTTCTA
AGGAGCTCCTGGAATATTATCAAAAGAAGATGGCTGAGTGTGAGGCAGAAAATGAGGACTTGCTGAAGAA
ACTGGAACTCTACAAAGAAGCTTGTGAAGGACAGCATAAACTTGAATGTGATTTGCAGCAGAGGGAGGAA
GAGATTGCTGAATTGCAGAAAGCTCTAAGTGATATGCAGGTCTGCCTCTTCCAGGAACGGGAACATGTTT
TACGCCTCTACTCAGAAAATGACCGACTGAGAATCAGGGAGCTAGAAGACAAGAAAAAGATTCAGAATCT
CTTGGCTCTTGTGGGAACAGATGCTGGAGAAGTGACCTATTTTTGTAAGGAGCCTCCTCACAAAGTCACC
ATTCTCCAAAAGACTATCCAGGCTGTAGGTGAATGTGAGCAGAGTGAATCTTCAGCTTTCAAAGCAGATC
CTAAAATAAGCAAAAGAAGACCATCGAGAGAGAGAAAAGAAAGTTCTGAGCATTACCAAAGAGACATACA
GACACTCATCCTACAGGTGGAAGCACTGCAGGCTCAGCTGGGAGAGCAGACCAAACTTTCTCGAGAACAA
ATTGAAGGGCTCATCGAGGACAGACGGATTCACCTTGAGGAAATACAAGTTCAGCACCAGAGAAATCAGA
ACAAAATCAAAGAGCTAACCAAAAATCTTCACCACACCCAAGAACTGCTCTATGAGAGCACCAAAGATTT
TCTGCAACTCAGATCTGAAAACCAAAATAAAGAGAAGTCATGGATGCTTGAAAAAGATAATTTGATGTCA
AAGATTAAGCAATATAGGGTGCAGTGTAAGAAGAAAGAAGATAAAATTGGAAAAGTGTTGCCCGTTATGC
ATGAGAGTCACCATGCTCAAAGTGAATATATTAAGTCCCTAAAAGATAAGTTAGTACAAGAGAAAAAGCT
GTCCAATATGTACCAAGAGCAGTGCATTTCCTTAGAAGAAGAACTTGCCCGAATTCGTGAGGAAGAGGGA
ATGAGGAGAGAGATCTTCAAGGATCGCACTAACAAGATGGGGAAGCGTTTACAGATAATGACAAAACGCT
ATGAGGCATTGGAGCGTCGACGTATCCTGGAAGTAGAAGGCTTTAAGACAGATATTAAAGTTCTCCGACA
GAAACTGAAAGACTTGGAGCAAATGTTGTATAAGGCAACAGTTAATGCCCGGGCAAACCAGGATCTTGCC
CTTCTGTGTGAGGTCCGTGACAGCAATAGACGGGCACATAAGATACAAGGAGAACTGAAGAATCTTAAGT
CGAAAGTGTTTGGTCTGGAGAATGAACTTAGACTCTGTTAA

Translation (456 aa):
MADSLESTPLPSPEDRLAKLHPSKELLEYYQKKMAECEAENEDLLKKLELYKEACEGQHKLECDLQQREE
EIAELQKALSDMQVCLFQEREHVLRLYSENDRLRIRELEDKKKIQNLLALVGTDAGEVTYFCKEPPHKVT
ILQKTIQAVGECEQSESSAFKADPKISKRRPSRERKESSEHYQRDIQTLILQVEALQAQLGEQTKLSREQ
IEGLIEDRRIHLEEIQVQHQRNQNKIKELTKNLHHTQELLYESTKDFLQLRSENQNKEKSWMLEKDNLMS
KIKQYRVQCKKKEDKIGKVLPVMHESHHAQSEYIKSLKDKLVQEKKLSNMYQEQCISLEEELARIREEEG
MRREIFKDRTNKMGKRLQIMTKRYEALERRRILEVEGFKTDIKVLRQKLKDLEQMLYKATVNARANQDLA
LLCEVRDSNRRAHKIQGELKNLKSKVFGLENELRLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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