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Report for CCDS44829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44829.1 Public Homo sapiens 12 CLEC2A 24 110 108 CCDS HistoryNCBI Gene:387836Re-query CCDS DB by CCDS ID:44829.1Re-query CCDS DB by GeneID:387836See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44829.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000455827.2 ENSP00000396163.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000455827.2Link to Ensembl Protein Viewer:ENSP00000396163.1Re-query CCDS DB by Nucleotide ID:ENST00000455827Re-query CCDS DB by Protein ID:ENSP00000396163
Original member Current member NCBI NM_001130711.2 NP_001124183.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001130711.2Link to Protein Sequence:NP_001124183.1Re-query CCDS DB by Nucleotide ID:NM_001130711Re-query CCDS DB by Protein ID:NP_001124183Link to BLAST:NP_001124183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124183.1 174 Q6UVW9-1 174 100% 0 0

Chromosomal Locations for CCDS 44829.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 9913566 9913680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 9916700 9916803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 9922066 9922232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 9926260 9926343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 9932275 9932329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGATTAATCCAGAGCTGCGGGATGGCAGAGCTGATGGCTTCATACATCGGATAGTTCCCAAGTTGATAC
AAAACTGGAAGATTGGCCTTATGTGCTTCCTGAGTATTATTATTACTACAGTTTGCATTATTATGATAGC
CACATGGTCCAAGCATGCTAAACCTGTGGCATGTTCAGGGGACTGGCTTGGAGTGAGAGATAAGTGTTTC
TATTTTTCTGATGATACCAGAAATTGGACAGCCAGTAAAATATTTTGTAGTTTGCAGAAAGCAGAACTTG
CTCAGATTGATACACAAGAAGACATGGAATTTTTGAAGAGGTACGCAGGAACTGATATGCACTGGATTGG
ACTAAGCAGGAAACAAGGAGATTCTTGGAAATGGACAAATGGCACCACATTCAATGGTTGGTTTGAAATT
ATAGGGAACGGATCCTTTGCTTTCTTGAGTGCTGATGGAGTCCATAGTTCCAGAGGATTTATTGATATCA
AGTGGATTTGCAGCAAACCTAAATATTTTTTATAG

Translation (174 aa):
MINPELRDGRADGFIHRIVPKLIQNWKIGLMCFLSIIITTVCIIMIATWSKHAKPVACSGDWLGVRDKCF
YFSDDTRNWTASKIFCSLQKAELAQIDTQEDMEFLKRYAGTDMHWIGLSRKQGDSWKWTNGTTFNGWFEI
IGNGSFAFLSADGVHSSRGFIDIKWICSKPKYFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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