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Report for CCDS4495.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4495.1 Public Homo sapiens 6 NRN1 24 110 108 CCDS HistoryNCBI Gene:51299Re-query CCDS DB by CCDS ID:4495.1Re-query CCDS DB by GeneID:51299See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4495.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244766.7 ENSP00000244766.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244766.7Link to Ensembl Protein Viewer:ENSP00000244766.2Re-query CCDS DB by Nucleotide ID:ENST00000244766Re-query CCDS DB by Protein ID:ENSP00000244766
Original member Current member EBI ENST00000616243.1 ENSP00000484055.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616243.1Link to Ensembl Protein Viewer:ENSP00000484055.1Re-query CCDS DB by Nucleotide ID:ENST00000616243Re-query CCDS DB by Protein ID:ENSP00000484055
Original member Current member NCBI NM_001278710.2 NP_001265639.1 Accepted alive Link to Nucleotide Sequence:NM_001278710.2Link to Protein Sequence:NP_001265639.1Re-query CCDS DB by Nucleotide ID:NM_001278710Re-query CCDS DB by Protein ID:NP_001265639Link to BLAST:NP_001265639.1
Original member Current member NCBI NM_016588.3 NP_057672.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016588.3Link to Protein Sequence:NP_057672.1Re-query CCDS DB by Nucleotide ID:NM_016588Re-query CCDS DB by Protein ID:NP_057672Link to BLAST:NP_057672.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265639.1 142 Q9NPD7 142 100% 0 0
NP_057672.1 142 Q9NPD7 142 100% 0 0

Chromosomal Locations for CCDS 4495.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 5998976 5999204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6002353 6002497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 6006695 6006749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGGACTTAAGTTGAACGGCAGATATATTTCACTGATCCTCGCGGTGCAAATAGCGTATCTGGTGCAGG
CCGTGAGAGCAGCGGGCAAGTGCGATGCGGTCTTCAAGGGCTTTTCGGACTGTTTGCTCAAGCTGGGCGA
CAGCATGGCCAACTACCCGCAGGGCCTGGACGACAAGACGAACATCAAGACCGTGTGCACATACTGGGAG
GATTTCCACAGCTGCACGGTCACAGCCCTTACGGATTGCCAGGAAGGGGCGAAAGATATGTGGGATAAAC
TGAGAAAAGAATCCAAAAACCTCAACATCCAAGGCAGCTTATTCGAACTCTGCGGCAGCGGCAACGGGGC
GGCGGGGTCCCTGCTCCCGGCGTTCCCGGTGCTCCTGGTGTCTCTCTCGGCAGCTTTAGCGACCTGGCTT
TCCTTCTGA

Translation (142 aa):
MGLKLNGRYISLILAVQIAYLVQAVRAAGKCDAVFKGFSDCLLKLGDSMANYPQGLDDKTNIKTVCTYWE
DFHSCTVTALTDCQEGAKDMWDKLRKESKNLNIQGSLFELCGSGNGAAGSLLPAFPVLLVSLSAALATWL
SF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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