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Report for CCDS44953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44953.1 Public Homo sapiens 12 NR2C1 24 110 108 CCDS HistoryNCBI Gene:7181Re-query CCDS DB by CCDS ID:44953.1Re-query CCDS DB by GeneID:7181See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330677.7 ENSP00000328843.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000330677.7Link to Ensembl Protein Viewer:ENSP00000328843.7Re-query CCDS DB by Nucleotide ID:ENST00000330677Re-query CCDS DB by Protein ID:ENSP00000328843
Original member Current member NCBI NM_001127362.2 NP_001120834.1 Accepted alive Link to Nucleotide Sequence:NM_001127362.2Link to Protein Sequence:NP_001120834.1Re-query CCDS DB by Nucleotide ID:NM_001127362Re-query CCDS DB by Protein ID:NP_001120834Link to BLAST:NP_001120834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120834.1 483 P13056-3 483 100% 0 0

Chromosomal Locations for CCDS 44953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 95030815 95030873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95031349 95031488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95040476 95040597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95049068 95049233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95051762 95051943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95057553 95057643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95057731 95057878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95058310 95058489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95059906 95059984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95062508 95062738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95067331 95067384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGCAACCATAGAAGAAATTGCACATCAAATTATTGAACAACAGATGGGAGAGATTGTTACAGAGCAGC
AA
ACTGGGCAGAAAATCCAGATTGTGACAGCACTTGATCATAATACCCAAGGCAAGCAGTTCATTCTGAC
A
AATCACGACGGCTCTACTCCAAGCAAAGTCATTCTGGCCAGGCAAGATTCCACTCCGGGAAAAGTTTTC
CTT
ACAACTCCAGATGCAGCAGGTGTCAACCAGTTATTTTTTACCACTCCTGATCTGTCTGCACAACACC
TG
CAGCTCCTAACAGATAATTCTCCAGACCAAGGACCAAATAAGGTTTTTGATCTTTGCGTAGTATGTGG
A
GACAAAGCATCAGGACGTCATTATGGAGCAGTAACTTGTGAAGGCTGCAAAGGATTTTTTAAAAGAAGC
ATC
CGAAAAAATTTAGTATATTCATGTCGAGGATCAAAGGATTGTATTATTAATAAGCACCACCGAAACC
GC
TGTCAATACTGCAGGTTACAGAGATGTATTGCGTTTGGAATGAAGCAAGACTCTGTCCAATGTGAAAG
A
AAACCCATTGAAGTATCACGAGAAAAATCTTCCAACTGTGCCGCTTCAACAGAAAAAATCTATATCCGA
AAG
GACCTTCGTAGCCCATTAACTGCAACTCCAACTTTTGTAACAGATAGTGAAAGTACAAGGTCAACAG
GA
CTGTTAGATTCAGGAATGTTCATGAATATTCATCCATCTGGAGTAAAAACTGAGTCAGCTGTGCTGAT
G
ACATCAGATAAGGCTGAATCATGTCAGGGAGATTTAAGTACATTGGCCAATGTGGTTACATCATTAGCG
AAT
CTTGGAAAAACTAAAGATCTTTCTCAAAATAGTAATGAAATGTCTATGATTGAAAGCTTAAGCAATG
AT
GATACCTCTTTGTGTGAATTTCAAGAAATGCAGACCAACGGTGATGTTTCAAGGGCATTTGACACTCT
T
GCAAAAGCATTGAATCCTGGAGAGAGCACAGCCTGCCAGAGCTCAGTAGCGGGCATGGAAGGAAGTGTA
CAC
CTAATCACTGGAGATTCAAGCATAAATTACACCGAAAAAGAGGGGCCACTTCTCAGCGATTCACATG
TA
GCTTTCAGGCTCACCATGCCTTCTCCTATGCCTGAGTACCTGAATGTGCACTACATTGGGGAGTCTGC
C
TCCAGACTGCTGTTCTTATCAATGCACTGGGCACTTTCGATTCCTTCTTTCCAGGCTCTAGGGCAAGAA
AAC
AGCATATCACTGGTGAAAGCTTACTGGAATGAACTTTTTACTCTTGGTCTTGCCCAGTGCTGGCAAG
TG
ATGAATGTAGCAACTATATTAGCAACATTTGTCAATTGTCTTCACAATAGTCTTCAACAAGATGCCAA
G
GTAATTGCAGCCCTCATTCATTTCACAAGACGAGCAATCACTGATTTATAA


Translation (483 aa):
MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILARQDSTPGKVF
L
TTPDAAGVNQLFFTTPDLSAQHLQ
LLTDNSPDQGPNKVFDLCVVCGDKASGRHYGAVTCEGCKGFFKRS
I
RKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQD
SVQCERKPIEVSREKSSNCAASTEKIYIR
K
DLRSPLTATPTFVTDSEST
RSTGLLDSGMFMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLA
N
LGKTKDLSQNSNEMSMIESLSNDDTSLCEFQEMQTNGDVS
RAFDTLAKALNPGESTACQSSVAGMEGSV
H
LITGDSSINYTEKEGPLLSDSHVAFR
LTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQE
N
SISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQ
DAKVIAALIHFTRRAITDL



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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