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Report for CCDS45027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45027.1 Public Homo sapiens 13 CCDC169 24 110 108 CCDS HistoryNCBI Gene:728591Re-query CCDS DB by CCDS ID:45027.1Re-query CCDS DB by GeneID:728591See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45027.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379864.6 ENSP00000369193.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379864.6Link to Ensembl Protein Viewer:ENSP00000369193.2Re-query CCDS DB by Nucleotide ID:ENST00000379864Re-query CCDS DB by Protein ID:ENSP00000369193
Original member Current member EBI ENST00000491049.6 ENSP00000425252.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000491049.6Link to Ensembl Protein Viewer:ENSP00000425252.1Re-query CCDS DB by Nucleotide ID:ENST00000491049Re-query CCDS DB by Protein ID:ENSP00000425252
Original member Current member NCBI NM_001144982.3 NP_001138454.1 Accepted alive Link to Nucleotide Sequence:NM_001144982.3Link to Protein Sequence:NP_001138454.1Re-query CCDS DB by Nucleotide ID:NM_001144982Re-query CCDS DB by Protein ID:NP_001138454Link to BLAST:NP_001138454.1
Original member Current member NCBI NM_001144983.3 NP_001138455.1 Accepted alive Link to Nucleotide Sequence:NM_001144983.3Link to Protein Sequence:NP_001138455.1Re-query CCDS DB by Nucleotide ID:NM_001144983Re-query CCDS DB by Protein ID:NP_001138455Link to BLAST:NP_001138455.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138454.1 139 A6NNP5-3 139 100% 0 0
NP_001138455.1 139 A6NNP5-3 139 100% 0 0

Chromosomal Locations for CCDS 45027.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36227201 36227381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36248606 36248682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36253803 36253856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36254045 36254143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36283469 36283477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGCCAGTGGAATCCTTAAACACATTACTTAAACAGCTAGAAGAAGAAAAGAAGACTCTTGAAAGTCAAG
TGAAATACTATGCACTTAAACTGGAACAAGAATCAAAGGCTTACCAGAAGATCAACAATGAACGCCGTAC
ATACCTAGCTGAAATGTCTCAGGGTTCTGGTTTACATCAAGTTTCTAAAAGGCAACAGGTGGATCAACTG
CCTAGGATGCAAGAGAATCTAGTGAAAACCCTCCTCTTAAAAGAAGAATTGGACCCTTTAAAGGTCAGCT
GCTTGGAGACATTGGGTTTCAGTGCTGCAGGTGTGGCTGGACCAGAGAATAGGACATGCCTCGGACAAAA
AGCACTCTGGCCCGCCTGCTTACATGGGTCCTCAACCTTGGCTGTGTGTCAGACTCACCTGAAGAGCTAA

Translation (139 aa):
MPVESLNTLLKQLEEEKKTLESQVKYYALKLEQESKAYQKINNERRTYLAEMSQGSGLHQVSKRQQVDQL
PRMQENLVKTLLLKEELDPLKVSCLETLGFSAAGVAGPENRTCLGQKALWPACLHGSSTLAVCQTHLKS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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