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Report for CCDS45028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45028.1 Public Homo sapiens 13 CCDC169 24 110 108 CCDS HistoryNCBI Gene:728591Re-query CCDS DB by CCDS ID:45028.1Re-query CCDS DB by GeneID:728591See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45028.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000239859.8 ENSP00000239859.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000239859.8Link to Ensembl Protein Viewer:ENSP00000239859.7Re-query CCDS DB by Nucleotide ID:ENST00000239859Re-query CCDS DB by Protein ID:ENSP00000239859
Original member Current member NCBI NM_001144981.3 NP_001138453.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144981.3Link to Protein Sequence:NP_001138453.1Re-query CCDS DB by Nucleotide ID:NM_001144981Re-query CCDS DB by Protein ID:NP_001138453Link to BLAST:NP_001138453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138453.1 214 A6NNP5-1 214 100% 0 0

Chromosomal Locations for CCDS 45028.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36231193 36231292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36248606 36248682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36253803 36253856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36254045 36254143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36283469 36283509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36283592 36283702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36295778 36295857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36297637 36297719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGAAGGAAGAGAGAAACTACAACTTCGACGGTGTGAGCACCAACCGCCTGAAACAGCAGTTGCTGGAAG
AAGTCCGCAAGAAGGATGCAGTGCAACTCTCAATATTTGAACTAAGACACAAGATTACGGAACTGGAAGC
CAAACTCAATACTGACAATGAAGGTAGTGAATGGAAAACCCGTTATGAGACACAACTTGAATTAAATGAT
GAACTAGAAAAGCAAATTGTTTATCTCAAGGAGAAAGTGGAAAAAATCCATGGAAACTCTTCAGATAGAC
TATCTTCTATTCGTGTCTATGAACGAATGCCAGTGGAATCCTTAAACACATTACTTAAACAGCTAGAAGA
AGAAAAGAAGACTCTTGAAAGTCAAGTGAAATACTATGCACTTAAACTGGAACAAGAATCAAAGGCTTAC
CAGAAGATCAACAATGAACGCCGTACATACCTAGCTGAAATGTCTCAGGGTTCTGGTTTACATCAAGTTT
CTAAAAGGCAACAGGTGGATCAACTGCCTAGGATGCAAGAGAATCTAGTGAAAACTGGAAGATATAATCC
AGCTAAGCAGAAGACAGTGAGTGCCAAGAGAGGACCAGTAAAAAAGATTACAAGACCAAACCATCTTCCA
GAACTCCATCCATGA

Translation (214 aa):
MKEERNYNFDGVSTNRLKQQLLEEVRKKDAVQLSIFELRHKITELEAKLNTDNEGSEWKTRYETQLELND
ELEKQIVYLKEKVEKIHGNSSDRLSSIRVYERMPVESLNTLLKQLEEEKKTLESQVKYYALKLEQESKAY
QKINNERRTYLAEMSQGSGLHQVSKRQQVDQLPRMQENLVKTGRYNPAKQKTVSAKRGPVKKITRPNHLP
ELHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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