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Report for CCDS45060.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45060.1 Public Homo sapiens 13 DCT 24 110 108 CCDS HistoryNCBI Gene:1638Re-query CCDS DB by CCDS ID:45060.1Re-query CCDS DB by GeneID:1638See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 45060.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446125.1 ENSP00000392762.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446125.1Link to Ensembl Protein Viewer:ENSP00000392762.1Re-query CCDS DB by Nucleotide ID:ENST00000446125Re-query CCDS DB by Protein ID:ENSP00000392762
Original member Current member NCBI NM_001129889.3 NP_001123361.1 Accepted alive Link to Nucleotide Sequence:NM_001129889.3Link to Protein Sequence:NP_001123361.1Re-query CCDS DB by Nucleotide ID:NM_001129889Re-query CCDS DB by Protein ID:NP_001123361Link to BLAST:NP_001123361.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123361.1 552 P40126-2 552 100% 0 0

Chromosomal Locations for CCDS 45060.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 94439898 94440076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94443436 94443637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94445719 94445761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94452607 94452662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94460091 94460226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94462010 94462189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94465633 94465799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94466558 94466658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94468746 94469045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 94478961 94479255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGAGCCCCCTTTGGTGGGGGTTTCTGCTCAGTTGCTTGGGCTGCAAAATCCTGCCAGGAGCCCAGGGTC
AGTTCCCCCGAGTCTGCATGACGGTGGACAGCCTAGTGAACAAGGAGTGCTGCCCACGCCTGGGTGCAGA
GTCGGCCAATGTCTGTGGCTCTCAGCAAGGCCGGGGGCAGTGCACAGAGGTGCGAGCCGACACAAGGCCC
TGGAGTGGTCCCTACATCCTACGAAACCAGGATGACCGTGAGCTGTGGCCAAGAAAATTCTTCCACCGGA
CCTGCAAGTGCACAGGAAACTTTGCCGGCTATAATTGTGGAGACTGCAAGTTTGGCTGGACCGGTCCCAA
CTGCGAGCGGAAGAAACCACCAGTGATTCGGCAGAACATCCATTCCTTGAGTCCTCAGGAAAGAGAGCAG
TTCTTGGGCGCCTTAGATCTCGCGAAGAAGAGAGTACACCCCGACTACGTGATCACCACACAACACTGGC
TGGGCCTGCTTGGGCCCAATGGAACCCAGCCGCAGTTTGCCAACTGCAGTGTTTATGATTTTTTTGTGTG
GCTCCATTATTATTCTGTTAGAGATACATTATTAGGACCAGGACGCCCCTACAGGGCCATAGATTTCTCA
CATCAAGGACCTGCATTTGTTACCTGGCACCGGTACCATTTGTTGTGTCTGGAAAGAGATCTCCAGCGAC
TCATTGGCAATGAGTCTTTTGCTTTGCCCTACTGGAACTTTGCCACTGGGAGGAACGAGTGTGATGTGTG
TACAGACCAGCTGTTTGGGGCAGCGAGACCAGACGATCCGACTCTGATTAGTCGGAACTCAAGATTCTCC
AGCTGGGAAACTGTCTGTGATAGCTTGGATGACTACAACCACCTGGTCACCTTGTGCAATGGAACCTATG
AAGGTTTGCTGAGAAGAAATCAAATGGGAAGAAACAGCATGAAATTGCCAACCTTAAAAGACATACGAGA
TTGCCTGTCTCTCCAGAAGTTTGACAATCCTCCCTTCTTCCAGAACTCTACCTTCAGTTTCAGGAATGCT
TTGGAAGGGTTTGATAAAGCAGATGGGACTCTGGATTCTCAAGTGATGAGCCTTCATAATTTGGTTCATT
CCTTCCTGAACGGGACAAACGCTTTGCCACATTCAGCCGCCAATGATCCCATTTTTGTGGTGATTTCTAA
TCGTTTGCTTTACAATGCTACAACAAACATCCTTGAACATGTAAGAAAAGAGAAAGCGACCAAGGAACTC
CCTTCCCTGCATGTGCTGGTTCTTCATTCCTTTACTGATGCCATCTTTGATGAGTGGATGAAAAGATTTA
ATCCTCCTGCAGATGCCTGGCCTCAGGAGCTGGCCCCTATTGGTCACAATCGGATGTACAACATGGTTCC
TTTCTTCCCTCCAGTGACTAATGAAGAACTCTTTTTAACCTCAGACCAACTTGGCTACAGCTATGCCATC
GATCTGCCAGTTTCAGTTGAAGAAACTCCAGGTTGGCCCACAACTCTCTTAGTAGTCATGGGAACACTGG
TGGCTTTGGTTGGTCTTTTTGTGCTGTTGGCTTTTCTTCAATATAGAAGACTTCGAAAAGGATATACACC
CCTAATGGAGACACATTTAAGCAGCAAGAGATACACAGAAGAAGCCTAG

Translation (552 aa):
MSPLWWGFLLSCLGCKILPGAQGQFPRVCMTVDSLVNKECCPRLGAESANVCGSQQGRGQCTEVRADTRP
WSGPYILRNQDDRELWPRKFFHRTCKCTGNFAGYNCGDCKFGWTGPNCERKKPPVIRQNIHSLSPQEREQ
FLGALDLAKKRVHPDYVITTQHWLGLLGPNGTQPQFANCSVYDFFVWLHYYSVRDTLLGPGRPYRAIDFS
HQGPAFVTWHRYHLLCLERDLQRLIGNESFALPYWNFATGRNECDVCTDQLFGAARPDDPTLISRNSRFS
SWETVCDSLDDYNHLVTLCNGTYEGLLRRNQMGRNSMKLPTLKDIRDCLSLQKFDNPPFFQNSTFSFRNA
LEGFDKADGTLDSQVMSLHNLVHSFLNGTNALPHSAANDPIFVVISNRLLYNATTNILEHVRKEKATKEL
PSLHVLVLHSFTDAIFDEWMKRFNPPADAWPQELAPIGHNRMYNMVPFFPPVTNEELFLTSDQLGYSYAI
DLPVSVEETPGWPTTLLVVMGTLVALVGLFVLLAFLQYRRLRKGYTPLMETHLSSKRYTEEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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