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Report for CCDS45066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45066.1 Public Homo sapiens 13 GGACT 24 110 108 CCDS HistoryNCBI Gene:87769Re-query CCDS DB by CCDS ID:45066.1Re-query CCDS DB by GeneID:87769See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45066.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376250.6 ENSP00000365426.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376250.6Link to Ensembl Protein Viewer:ENSP00000365426.1Re-query CCDS DB by Nucleotide ID:ENST00000376250Re-query CCDS DB by Protein ID:ENSP00000365426
Original member Current member EBI ENST00000455100.2 ENSP00000410449.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000455100.2Link to Ensembl Protein Viewer:ENSP00000410449.1Re-query CCDS DB by Nucleotide ID:ENST00000455100Re-query CCDS DB by Protein ID:ENSP00000410449
Original member Current member EBI ENST00000683975.1 ENSP00000508020.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683975.1Link to Ensembl Protein Viewer:ENSP00000508020.1Re-query CCDS DB by Nucleotide ID:ENST00000683975Re-query CCDS DB by Protein ID:ENSP00000508020
Original member Current member NCBI NM_001195087.2 NP_001182016.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001195087.2Link to Protein Sequence:NP_001182016.1Re-query CCDS DB by Nucleotide ID:NM_001195087Re-query CCDS DB by Protein ID:NP_001182016Link to BLAST:NP_001182016.1
Original member Current member NCBI NM_033110.3 NP_149101.1 Accepted alive Link to Nucleotide Sequence:NM_033110.3Link to Protein Sequence:NP_149101.1Re-query CCDS DB by Nucleotide ID:NM_033110Re-query CCDS DB by Protein ID:NP_149101Link to BLAST:NP_149101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182016.1 153 Q9BVM4 153 100% 0 0
NP_149101.1 153 Q9BVM4 153 100% 0 0

Chromosomal Locations for CCDS 45066.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100532130 100532591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCCCTAGTCTTCGTGTACGGCACCCTGAAGCGGGGTCAGCCCAACCACAGGGTCCTGCGGGACGGCG
CCCACGGCTCCGCAGCCTTTCGGGCGCGCGGCCGCACGCTGGAGCCCTACCCGTTGGTGATCGCGGGGGA
GCACAACATCCCGTGGCTGCTGCACCTGCCCGGCTCGGGGCGCCTCGTGGAGGGCGAGGTCTACGCGGTA
GACGAGCGGATGCTGCGCTTTCTGGATGACTTCGAGAGTTGCCCGGCCCTGTACCAGCGCACGGTGCTGC
GGGTACAGCTGCTGGAGGACCGGGCCCCGGGCGCAGAGGAGCCGCCAGCGCCCACCGCGGTGCAGTGCTT
CGTGTACAGCAGGGCCACCTTCCCGCCGGAGTGGGCCCAGCTCCCGCACCATGACAGCTACGACTCCGAG
GGGCCGCACGGGCTGCGCTACAACCCCCGGGAGAACAGATAA

Translation (153 aa):
MALVFVYGTLKRGQPNHRVLRDGAHGSAAFRARGRTLEPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAV
DERMLRFLDDFESCPALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSRATFPPEWAQLPHHDSYDSE
GPHGLRYNPRENR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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