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Report for CCDS45143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45143.1 Public Homo sapiens 14 ISM2 24 110 108 CCDS HistoryNCBI Gene:145501Re-query CCDS DB by CCDS ID:45143.1Re-query CCDS DB by GeneID:145501See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000493585.5 ENSP00000420452.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493585.5Link to Ensembl Protein Viewer:ENSP00000420452.1Re-query CCDS DB by Nucleotide ID:ENST00000493585Re-query CCDS DB by Protein ID:ENSP00000420452
Original member Current member NCBI NM_182509.4 NP_872315.2 Accepted alive Link to Nucleotide Sequence:NM_182509.4Link to Protein Sequence:NP_872315.2Re-query CCDS DB by Nucleotide ID:NM_182509Re-query CCDS DB by Protein ID:NP_872315Link to BLAST:NP_872315.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872315.2 292 Q6H9L7-2 292 100% 0 0

Chromosomal Locations for CCDS 45143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77476086 77476112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77478242 77478325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77478575 77478715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77484323 77484565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77484677 77484919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77498653 77498793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGCGTGCGCTCCGCGACCGAGCCGGGCTCCTCCTCTGCGTGCTGCTGCTGGCGGCGCTGCTGGAGGCGG
CGCTAGGGCTCCCCGTGAAGAAGCCGCGGCTCCGCGGACCACGGCCTGGGAGCCTCACGAGGCTCGCAGA
GGTCTCAGCCTCCCCAGATCCTAGGCCTCTGAAGGAAGAGGAGGAGGCACCACTGCTCCCCAGAACCCAC
CTGCAGGCAGAGCCACACCAACATGGATGCTGGACTGTCACTGAGCCAGCAGCCATGACCCCAGGCAACG
CCACCCCTCCCAGGACCCCAGAGGTTACTCCGTTGCGGCTGGAGCTGCAGAAGCTGCCGGGATTGGCCAA
CACAACCTTGAGTACCCCTAACCCTGATACCCAGGCTTCAGCCTCCCCAGATCCTAGGCCTCTGAGGGAA
GAGGAGGAGGCACGACTGCTCCCCAGAACCCACCTGCAGGCAGAGCTACACCAACATGGATGTTGGACTG
TCACTGAGCCAGCAGCCCTGACCCCAGGGAATGCCACGCCTCCCAGGACCCAGGAGGTTACTCCCTTGCT
GCTGGAGCTGCAGAAGCTGCCAGAATTGGTCCACGCAACCTTGAGTACCCCTAACCCTGATAACCAGACT
ATGAGCCTCAGAAGGAGTGGAGTCCCTGGTCTCCCTGCAGTGGGAACTGCAGCACTGGCAAGCAGCAGAG
GACTCGGCCCTGTGGCTATGGCTGCACTGCCACCGAGACCCGTACCTGTGACCTGCCCTCCTGTCCTGGC
ACTGAGGACAAGGACACCTTGGGCCTCCCCAGTGAGGAGTGGAAGCTCCTGGCCCGCAATGCTACGGACA
TGCATGATCAAGATGTGGACAGCTGTGAGAAGTGGCTGA

Translation (292 aa):
MRALRDRAGLLLCVLLLAALLEAALGLPVKKPRLRGPRPGSLTRLAEVSASPDPRPLKEEEEAPLLPRTH
LQAEPHQHGCWTVTEPAAMTPGNATPPRTPEVTPLRLELQKLPGLANTTLSTPNPDTQASASPDPRPLRE
EEEARLLPRTHLQAELHQHGCWTVTEPAALTPGNATPPRTQEVTPLLLELQKLPELVHATLSTPNPDNQT
MSLRRSGVPGLPAVGTAALASSRGLGPVAMAALPPRPVPVTCPPVLALRTRTPWASPVRSGSSWPAMLRT
CMIKMWTAVRSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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