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Report for CCDS45158.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45158.2 Public Homo sapiens 14 LYSET 24 110 108 CCDS HistoryNCBI Gene:26175Re-query CCDS DB by CCDS ID:45158.2Re-query CCDS DB by GeneID:26175See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 45158.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 45158.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415050.3 ENSP00000388431.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000415050.3Link to Ensembl Protein Viewer:ENSP00000388431.3Re-query CCDS DB by Nucleotide ID:ENST00000415050Re-query CCDS DB by Protein ID:ENSP00000388431
Original member Current member NCBI NM_001098621.4 NP_001092091.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098621.4Link to Protein Sequence:NP_001092091.2Re-query CCDS DB by Nucleotide ID:NM_001098621Re-query CCDS DB by Protein ID:NP_001092091Link to BLAST:NP_001092091.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092091.2 163 Q8N6I4-1 163 100% 0 0

Chromosomal Locations for CCDS 45158.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 93185406 93185485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 93186260 93186671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGCCAAAGCCACCCGATTATTCAGAGCTGAGTGACTCTTTAACGCTTGCCGTGGGAACAGGAAGATTTT
CGGGACCATTGCACAGAGCATGGAGAATGATGAACTTCCGTCAGCGGATGGGATGGATTGGAGTGGGATT
GTATCTGTTAGCCAGTGCAGCAGCATTTTACTATGTTTTTGAAATCAGTGAGACTTACAACAGGCTGGCC
TTGGAACACATTCAACAGCACCCTGAGGAGCCCCTTGAAGGAACCACATGGACACACTCCTTGAAAGCTC
AATTACTCTCCTTGCCTTTTTGGGTGTGGACAGTTATTTTTCTGGTACCTTACTTACAGATGTTTTTGTT
CCTATACTCTTGTACAAGAGCTGATCCCAAAACAGTGGGCTACTGTATCATCCCTATATGCTTGGCAGTT
ATTTGCAATCGCCACCAGGCATTTGTCAAGGCTTCTAATCAGATCAGCAGACTACAACTGATTGACACGT
AA

Translation (163 aa):
MPKPPDYSELSDSLTLAVGTGRFSGPLHRAWRMMNFRQRMGWIGVGLYLLASAAAFYYVFEISETYNRLA
LEHIQQHPEEPLEGTTWTHSLKAQLLSLPFWVWTVIFLVPYLQMFLFLYSCTRADPKTVGYCIIPICLAV
ICNRHQAFVKASNQISRLQLIDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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