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Report for CCDS45233.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45233.2 Public Homo sapiens 15 CHAC1 24 110 108 CCDS HistoryNCBI Gene:79094Re-query CCDS DB by CCDS ID:45233.2Re-query CCDS DB by GeneID:79094See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 45233.1
The coding region has been updated to trim the N-terminus to one that is more supported by available transcript data, CAGE data and conservation data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45233.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444189.7 ENSP00000395466.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444189.7Link to Ensembl Protein Viewer:ENSP00000395466.3Re-query CCDS DB by Nucleotide ID:ENST00000444189Re-query CCDS DB by Protein ID:ENSP00000395466
Original member Current member NCBI NM_001142776.4 NP_001136248.2 Accepted alive Link to Nucleotide Sequence:NM_001142776.4Link to Protein Sequence:NP_001136248.2Re-query CCDS DB by Nucleotide ID:NM_001142776Re-query CCDS DB by Protein ID:NP_001136248Link to BLAST:NP_001136248.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136248.2 177 Q9BUX1-2 177 100% 0 0

Chromosomal Locations for CCDS 45233.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 40953584 40953814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40954228 40954263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40955373 40955414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 40955550 40955774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGAAGCAGGAGTCTGCAGCCCCGAACACCCCGCCCACCTCGCAGTCCCCTACGCCGTCCGCTCAGTTCC
CCCGAAACGACGGCGACCCTCAAGCGCTGTGGATTTTCGGGTACGGCTCCCTGGTGTGGAGGCCCGACTT
CGCCTACAGCGACAGCCGTGTGGGCTTCGTGCGCGGCTACAGCCGCCGTTTCTGGCAGGGAGACACCTTC
CATCGGGGCAGCGACAAGATGCCTGGCCGTGTGGTGACGCTCCTTGAAGATCATGAGGGCTGCACTTGGG
GCGTGGCATACCAAGTGCAAGGGGAGCAGAACCCTGGTTACCTGGGCCCTGCGCCTGAAGAGGCCATTGC
CACGCAGATCCTGGCCTGCCGGGGCTTCTCCGGCCACAACCTTGAATACTTGCTGCGTCTGGCAGACTTC
ATGCAGCTCTGTGGGCCTCAGGCGCAGGACGAGCACCTGGCAGCCATCGTGGACGCTGTGGGCACCATGT
TGCCCTGCTTCTGCCCCACCGAGCAGGCTCTGGCGCTGGTGTGA

Translation (177 aa):
MKQESAAPNTPPTSQSPTPSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTF
HRGSDKMPGRVVTLLEDHEGCTWGVAYQVQGEQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADF
MQLCGPQAQDEHLAAIVDAVGTMLPCFCPTEQALALV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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