NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45393.1 Public Homo sapiens 16 BICDL2 24 110 108 CCDS HistoryNCBI Gene:146439Re-query CCDS DB by CCDS ID:45393.1Re-query CCDS DB by GeneID:146439See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389347.4 ENSP00000373998.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389347.4Link to Ensembl Protein Viewer:ENSP00000373998.4Re-query CCDS DB by Nucleotide ID:ENST00000389347Re-query CCDS DB by Protein ID:ENSP00000373998
Original member Current member EBI ENST00000572449.6 ENSP00000459043.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000572449.6Link to Ensembl Protein Viewer:ENSP00000459043.1Re-query CCDS DB by Nucleotide ID:ENST00000572449Re-query CCDS DB by Protein ID:ENSP00000459043
Original member Current member NCBI NM_001103175.2 NP_001096645.1 Accepted alive Link to Nucleotide Sequence:NM_001103175.2Link to Protein Sequence:NP_001096645.1Re-query CCDS DB by Nucleotide ID:NM_001103175Re-query CCDS DB by Protein ID:NP_001096645Link to BLAST:NP_001096645.1
Original member Current member NCBI NM_001369667.1 NP_001356596.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001369667.1Link to Protein Sequence:NP_001356596.1Re-query CCDS DB by Nucleotide ID:NM_001369667Re-query CCDS DB by Protein ID:NP_001356596Link to BLAST:NP_001356596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001096645.1 508 A1A5D9-1 508 100% 0 0
NP_001356596.1 508 A1A5D9-1 508 100% 0 0

Chromosomal Locations for CCDS 45393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3028106 3028273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3028348 3028468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3028700 3028830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3029280 3029429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3029545 3029739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3030449 3030595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3030696 3030812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3030935 3031150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3035215 3035496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGAGCTCTCCAGATGGGCCCAGCTTCCCGTCCGGGCCGCTCTCAGGGGGCGCCTCTCCCAGCGGCGACG
AGGGCTTCTTCCCCTTTGTGCTGGAGCGGCGGGACTCATTCCTGGGAGGGGGCCCAGGGCCTGAGGAGCC
CGAGGACCTAGCCTTGCAGCTGCAGCAGAAGGAGAAAGACCTGCTGTTGGCCGCGGAGCTCGGCAAGATG
CTTCTGGAGCGAAATGAAGAGCTGCGGCGGCAGCTGGAGACGCTGAGCGCCCAGCACTTGGAGCGTGAGG
AACGGCTCCAGCAGGAGAACCATGAGCTCCGGCGAGGCCTGGCAGCCCGAGGAGCCGAGTGGGAGGCCCG
GGCCGTGGAGCTGGAGGGGGACGTGGAGGCCCTGCGGGCCCAGCTTGGGGAGCAGCGCTCAGAGCAGCAG
GACAGTGGGCGAGAACGGGCACGGGCCCTCAGCGAGCTCAGCGAGCAGAACCTCCGGCTCAGCCAGCAGC
TGGCTCAGGCCTCCCAGACTGAGCAGGAACTTCAGAGGGAACTGGACGCCCTTCGGGGACAGTGCCAGGC
TCAGGCACTGGCTGGAGCAGAGCTGAGGACGCGGCTGGAGAGTCTGCAGGGGGAAAACCAGATGCTGCAG
AGCCGCCGGCAGGACCTGGAGGCCCAGATCCGAGGCCTGCGTGAGGAGGTGGAGAAGGGTGAGGGCAGAC
TGCAGACCACCCACGAGGAGTTGCTGCTGCTGAGGCGGGAGCGGCGGGAGCACAGCCTGGAGCTGGAACG
CGCACGGTCAGAGGCTGGGGAGGCGCTGAGTGCGCTGCGGAGGCTGCAGCGGCGCGTCTCCGAGCTGGAG
GAGGAGTCACGCCTCCAGGACGCCGACGTGTCGGCTGCCTCGTTGCAGTCAGAACTGGCCCACAGCCTCG
ACGACGGCGACCAGGGCCAGGGCGCCGACGCACCCGGAGACACCCCGACCACCCGGTCCCCAAAGACCCG
AAAGGCGTCCAGCCCCCAGCCTTCACCCCCGGAAGAGATCTTAGAGCCCCCCAAGAAGCGAACATCCCTC
AGTCCAGCGGAGATACTGGAGGAGAAGGAGGTGGAAGTGGCCAAGCTGCAAGATGAGATCTCGCTGCAGC
AGGCAGAGCTGCAGTCCCTGCGGGAAGAGCTGCAGAGGCAGAAGGAGCTGCGGGCGCAGGAAGACCCTGG
GGAGGCCCTGCACAGTGCCCTCTCAGACCGGGACGAGGCCGTGAACAAGGCCCTGGAGCTGTCCCTGCAG
CTCAACCGCGTCTCGCTGGAGCGAGACTCCCTGTCTCGGGAGCTGCTGCGCGCCATCCGCCAGAAGGTGG
CGCTCACGCAGGAGCTGGAGGCCTGGCAGGACGACATGCAGGTGGTGATCGGGCAGCAGCTGCGCTCACA
GCGCCAGAAGGAGCTGAGCGCCTCCGCGTCGTCGTCGACCCCGCGCCGTGCCGCGCCCCGCTTCTCGCTG
CGCCTGGGCCCCGGGCCCGCCGGTGGCTTTCTCAGTAACCTCTTCCGAAGGACCTGA

Translation (508 aa):
MSSPDGPSFPSGPLSGGASPSGDEGFFPFVLERRDSFLGGGPGPEEPEDLALQLQQKEKDLLLAAELGKM
LLERNEELRRQLETLSAQHLEREERLQQENHELRRGLAARGAEWEARAVELEGDVEALRAQLGEQRSEQQ
DSGRERARALSELSEQNLRLSQQLAQASQTEQELQRELDALRGQCQAQALAGAELRTRLESLQGENQMLQ
SRRQDLEAQIRGLREEVEKGEGRLQTTHEELLLLRRERREHSLELERARSEAGEALSALRRLQRRVSELE
EESRLQDADVSAASLQSELAHSLDDGDQGQGADAPGDTPTTRSPKTRKASSPQPSPPEEILEPPKKRTSL
SPAEILEEKEVEVAKLQDEISLQQAELQSLREELQRQKELRAQEDPGEALHSALSDRDEAVNKALELSLQ
LNRVSLERDSLSRELLRAIRQKVALTQELEAWQDDMQVVIGQQLRSQRQKELSASASSSTPRRAAPRFSL
RLGPGPAGGFLSNLFRRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH