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Report for CCDS45448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45448.1 Public Homo sapiens 16 KDM8 24 110 108 CCDS HistoryNCBI Gene:79831Re-query CCDS DB by CCDS ID:45448.1Re-query CCDS DB by GeneID:79831See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45448.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441782.6 ENSP00000398410.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441782.6Link to Ensembl Protein Viewer:ENSP00000398410.2Re-query CCDS DB by Nucleotide ID:ENST00000441782Re-query CCDS DB by Protein ID:ENSP00000398410
Original member Current member NCBI NM_001145348.2 NP_001138820.1 Accepted alive Link to Nucleotide Sequence:NM_001145348.2Link to Protein Sequence:NP_001138820.1Re-query CCDS DB by Nucleotide ID:NM_001145348Re-query CCDS DB by Protein ID:NP_001138820Link to BLAST:NP_001138820.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138820.1 454 Q8N371-3 454 100% 0 0

Chromosomal Locations for CCDS 45448.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 27204093 27204175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27210093 27210621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27213585 27213751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27214876 27215008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27215945 27215989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27218961 27219110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27220393 27220485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 27220566 27220730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGAGCCGCGAGAAATGCAGCCCCGGGGAAGGCGCTGAGGAGGGAAGGGGGTCTGAGGCCTCGGGGCTCA
AGGCCAGTGCGGGGCACGGGACTGAACCAGCTGGTGGTGGCCCGATGGCTGGAGACACCCACTGCCCCGC
AGAGCCCCTGGCCAGAGAAGGCACTTTATGGGAGGCCCTCAGGGCGCTCCTGCCGCACAGTAAAGAAGAC
CTGAAGTTGGACCTCGGGGAGAAAGTGGAGAGGAGCGTGGTGACATTGTTGCAGCGAGCCACTGAGCTCT
TCTACGAGGGCAGGAGGGACGAGTGTCTGCAGAGCAGCGAGGTGATCCTGGACTACTCCTGGGAGAAGCT
CAACACGGGCACATGGCAGGACGTAGACAAAGACTGGCGCCGGGTCTACGCCATCGGCTGCCTCCTGAAA
GCCCTGTGTCTGTGCCAGGCACCTGAGGATGCCAACACTGTGGCCGCAGCCCTGCGGGTCTGTGACATGG
GCCTGCTGATGGGGGCAGCCATCCTGGGGGACATCCTTCTTAAAGTCGCTGCCATCCTCCAGACACACCT
CCCTGGAAAGAGGCCTGCCCGTGGCTCCCTCCCAGAGCAACCCTGCACAAAGAAAGCAAGGGCGGACCAT
GGTTTGATTCCAGATGTGAAGTTAGAAAAAACAGTCCCCCGGCTGCACCGTCCGTCCCTCCAGCATTTCA
GGGAGCAGTTTTTGGTTCCAGGGAGGCCCGTGATCCTGAAAGGCGTGGCTGACCACTGGCCGTGCATGCA
GAAGTGGAGTTTGGAGTATATCCAGGAGATCGCTGGCTGCCGAACTGTCCCAGTGGAAGTTGGTTCGAGG
TACACAGATGAGGAATGGTCCCAGACCCTCATGACGGTCAACGAGTTCATCAGCAAATACATCGTGAATG
AGCCAAGGGACGTCGGGTACCTTGCTCAGCACCAGCTCTTTGACCAGATCCCGGAGTTGAAGCAGGACAT
CAGCATCCCCGACTACTGCAGCCTGGGCGATGGGGAGGAGGAGGAAATCACCATCAATGCCTGGTTTGGT
CCCCAGGGAACCATCTCCCCACTACATCAGGATCCCCAGCAAAACTTCCTAGTGCAGGTGATGGGGAGGA
AGTACATCCGGCTGTATTCCCCGCAGGAGTCAGGGGCTCTGTACCCTCATGACACGCACCTTCTCCATAA
CACGAGCCAGGTTGACGTGGAGAATCCCGACCTGGAAAAGTTCCCCAAGTTTGCCAAGGCCCCATTCCTG
TCCTGCATCCTGTCTCCTGGAGAGATCCTGTTCATCCCGGTGAAATACTGGCATTACGTGCGGGCTCTGG
ATTTGAGCTTCTCGGTCAGCTTCTGGTGGTCGTAG

Translation (454 aa):
MSREKCSPGEGAEEGRGSEASGLKASAGHGTEPAGGGPMAGDTHCPAEPLAREGTLWEALRALLPHSKED
LKLDLGEKVERSVVTLLQRATELFYEGRRDECLQSSEVILDYSWEKLNTGTWQDVDKDWRRVYAIGCLLK
ALCLCQAPEDANTVAAALRVCDMGLLMGAAILGDILLKVAAILQTHLPGKRPARGSLPEQPCTKKARADH
GLIPDVKLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQEIAGCRTVPVEVGSR
YTDEEWSQTLMTVNEFISKYIVNEPRDVGYLAQHQLFDQIPELKQDISIPDYCSLGDGEEEEITINAWFG
PQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFL
SCILSPGEILFIPVKYWHYVRALDLSFSVSFWWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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