NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45471.1 Public Homo sapiens 16 ZNF843 24 110 108 CCDS HistoryNCBI Gene:283933Re-query CCDS DB by CCDS ID:45471.1Re-query CCDS DB by GeneID:283933See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315678.10 ENSP00000322899.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315678.10Link to Ensembl Protein Viewer:ENSP00000322899.5Re-query CCDS DB by Nucleotide ID:ENST00000315678Re-query CCDS DB by Protein ID:ENSP00000322899
Original member Current member EBI ENST00000618063.1 ENSP00000483573.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618063.1Link to Ensembl Protein Viewer:ENSP00000483573.1Re-query CCDS DB by Nucleotide ID:ENST00000618063Re-query CCDS DB by Protein ID:ENSP00000483573
Original member Current member NCBI NM_001136509.3 NP_001129981.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136509.3Link to Protein Sequence:NP_001129981.1Re-query CCDS DB by Nucleotide ID:NM_001136509Re-query CCDS DB by Protein ID:NP_001129981Link to BLAST:NP_001129981.1
Original member Current member NCBI NM_001353381.1 NP_001340310.1 Accepted alive Link to Nucleotide Sequence:NM_001353381.1Link to Protein Sequence:NP_001340310.1Re-query CCDS DB by Nucleotide ID:NM_001353381Re-query CCDS DB by Protein ID:NP_001340310Link to BLAST:NP_001340310.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129981.1 348 Q8N446 348 100% 0 0
NP_001340310.1 348 Q8N446 348 100% 0 0

Chromosomal Locations for CCDS 45471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31435803 31436849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGAGAAGCCTCCCCTTTGCCCTGACTGTGGAAAGCGTTTCAGCCAGAGCTCCTACCTGCTGCAGCACCG
GCAGATTCACCCAGGGCCGTCAGCCCTGCAAGTGCAAGGCCTGCGGGAGGGGTTTTACTCAGAGCGCATC
CCTCCTCCAGCACTGGCGGGTCCACAGCGACTGGCGAGAGACCTTGTCGCTGTCCCCAGTGCGGCAAGAC
CTGCTGTGGCCGCTCCAACCTCATCAAGCACCAGCGAGTCCACTCGGGAGAAGCCATTCGTCTGCGGGAG
TGCGGCAAGGGTTTAGCGGCCAGCTCTGCTGCTGGCTCACCAAGGAGCACACACTGGCCGAAGCCCTGCG
TCTGTCCCCAGTACCAGCAGGTTTTTGGGGACCGGTGGAAGCTGATCGGCCACCAGCGAATTCACACAGG
AGAGTGTGTCCCTTCTGCTGCTGCAGCTGCGGTGACAGTGTCAATGAGAAGACCTCCCTCTCCCAGCGCG
TCCTTCCGCACCCAGGGGAGAAGACCTGCAGGGGTGGGAGCGTGGAGAGCGTCAGCCTCGCACCCAGCTC
AGTCGCCCCGGACAGCACCTCTGGGCTCCGGCCCTGTGGGAGCCCCGGGTCCTTCCTTCAACATCTGCCC
CCATCCACACTCCTGCCCCGACCTCCCTTCCTTTATCCTGGCCCCCCACTCAGTCTCCAGCCTCTGGTTC
CATCCGGCCTTCCCGCAGTGCCTGCAGTGCCTCTGGGAGGCCTGGAAGTTGCCCAGGTTCCGCCAGCCAC
CCAGCCGGCAGCTCAGCAGGAGGGGGCGATGGGGCCCAGAAGCTGTGCGAGCGCGGGACGGGACTCGCGG
GAGGCGGTTCAGGCCCCAGGCTACCCTGAGCCAGCCCGGAAGGCCTCGCAGCACAGAGCGGCCGGACCGC
TCGGCGAGGCCAGGGCCAGGCTTCAGCGACAGTGCCGAGCTCCTCCACCGCCCTCGAACCCACACTGGAG
AGGAGCCCTACCAGTGTTTCCGGTGTGGAAGGCCTCCAGCCGGAGGTCCAACCTGGCCCGACACTGA

Translation (348 aa):
MRSLPFALTVESVSARAPTCCSTGRFTQGRQPCKCKACGRGFTQSASLLQHWRVHSDWRETLSLSPVRQD
LLWPLQPHQAPASPLGRSHSSAGVRQGFSGQLCCWLTKEHTLAEALRLSPVPAGFWGPVEADRPPANSHR
RVCPFCCCSCGDSVNEKTSLSQRVLPHPGEKTCRGGSVESVSLAPSSVAPDSTSGLRPCGSPGSFLQHLP
PSTLLPRPPFLYPGPPLSLQPLVPSGLPAVPAVPLGGLEVAQVPPATQPAAQQEGAMGPRSCASAGRDSR
EAVQAPGYPEPARKASQHRAAGPLGEARARLQRQCRAPPPPSNPHWRGALPVFPVWKASSRRSNLARH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH