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Report for CCDS45539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45539.1 Public Homo sapiens 16 GSE1 24 110 108 CCDS HistoryNCBI Gene:23199Re-query CCDS DB by CCDS ID:45539.1Re-query CCDS DB by GeneID:23199See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45539.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000405402.6 ENSP00000384839.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405402.6Link to Ensembl Protein Viewer:ENSP00000384839.2Re-query CCDS DB by Nucleotide ID:ENST00000405402Re-query CCDS DB by Protein ID:ENSP00000384839
Original member Current member NCBI NM_001134473.3 NP_001127945.1 Accepted alive Link to Nucleotide Sequence:NM_001134473.3Link to Protein Sequence:NP_001127945.1Re-query CCDS DB by Nucleotide ID:NM_001134473Re-query CCDS DB by Protein ID:NP_001127945Link to BLAST:NP_001127945.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127945.1 1113 Q14687-2 1113 100% 0 0

Chromosomal Locations for CCDS 45539.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 85648638 85648751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85654278 85654450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85654794 85654991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85655726 85655917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85656343 85656665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85657277 85657604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85661146 85661765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85662981 85663093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85663344 85663614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85665015 85665128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85665976 85666347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85668140 85668424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85670995 85671098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 85672405 85672539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3342 nt):
ATGGGCCCTATCATCGTCCCCCCTGGGGGCCACAGCGTGCCCAGCACCCCCCCCGTGGTGACCATCGCTC
CAACCAAAACCGTGAATGGTGTCTGGAGGAGTGAGAGCCGGCAGGATGCCGGCTCCAGGAGCAGCAGTGG
AGGTCGGGAACGCCTCATTGTGGAGCCCCCGCTCCCTCAGGAGAAGGCAGGGGGACCAGCCATCCCCTCG
CACCTGCTCAGCACCCCCTACCCCTTCGGCCTCTCCCCCAGCTCAGTTGTGCAGGATTCCCGCTTCCCGC
CACTCAACCTCCAGCGGCCCGTGCACCACGTGGTGCCCCCCAGTACCGTGACCGAGGACTACCTGAGAAG
CTTCCGGCCCTACCACACCACCGACGACCTCCGCATGTCCTCACTGCCTCCCCTCGGCCTGGACCCGGCC
ACTGCTGCAGCCTACTACCACCCCAGCTACCTGGCCCCACACCCCTTCCCCCACCCGGCCTTCAGGATGG
ACGACTCCTACTGCCTGTCTGCCCTGAGGTCCCCGTTCTACCCCATCCCCACCCCCGGCTCCCTGCCCCC
ACTGCACCCATCAGCGATGCACCTGCACCTCTCTGGGGTCCGCTACCCTCCCGAGCTCTCCCACTCATCC
CTGGCAGCGCTGCACTCGGAGCGCATGTCTGGCCTCAGCGCGGAGAGGCTGCAGATGGACGAGGAGCTAA
GGCGGGAGAGGGAGCGCGAGCGCGAGCGCGAGCGTGAGCGTGAGGCTGACCGCGAGCGGGAGAAGGAACG
TGAGCGCGAACGCGAGAAGGAGCGCGAGCAAGAGAAGGAGCGTGAGCGTGAGAAGGAGCGCGAGCGCGAG
CTGGAGCGCCAGCGGGAGCAGCGGGCCCGGGAGAAGGAGCTGCTGGCCGCCAAGGCCCTGGAGCCCAGCT
TCCTGCCCGTGGCCGAGCTGCATGGGCTGCGTGGCCATGCCACTGAGGAGCGGGGCAAGCCCTCGGAGCA
GCTGACCCCAACCCGAGCAGAGAAGCTGAAGGATGCCGGCCTGCAGGCGCCCAAGCCCGTCCAACACCCC
TTGCATCCGGTGCCCACCCCACACCACACGGTGCCCAGCCTCATCTCCAACCATGGCATCTTCTCTCTGC
CTAGCAGCAGTGCTGCCACAGCCCTGCTGATCCAGCGCACCAATGAGGAGGAGAAGTGGCTGGCGCGGCA
GCGGCGGCTGCGGCAGGAGAAGGAGGACCGGCAGTCTCAGGTGTCCGAGTTCCGGCAGCAGGTGCTGGAG
CAGCACCTGGATATGGGCCGGCCCCCGGTGCCGGCGGAGGCAGAGCACAGGCCGGAGAGCACCACCAGGC
CAGGACCAAACCGTCACGAGCCAGGTGGCCGTGACCCTCCGCAGCACTTTGGGGGGCCACCACCTCTGAT
TTCGCCCAAGCCCCAGCTCCATGCTGCACCCACGGCCCTCTGGAACCCCGTGTCCCTGATGGACAACACC
TTGGAGACGCGGCGGGCCGAAAGCCACTCTCTGCACAGCCACCCGGCTGCATTTGAGCCCAGCCGCCAGG
CAGCCGTGCCGCTGGTGAAGGTGGAGCGGGTCTTCTGCCCGGAGAAAGCAGAGGAGGGGCCACGGAAGCG
TGAGCCTGCCCCTCTGGACAAGTACCAGCCACCTCCGCCGCCACCACGAGAGGGAGGGAGCCTGGAGCAC
CAGCCCTTCCTGCCCGGGCCCGGGCCCTTCCTGGCTGAGCTCGAGAAGTCCACCCAGACCATCCTGGGCC
AGCAGCGGGCCTCCCTCCCACAGGCGGCCACCTTCGGGGAGCTCAGCGGACCCCTGAAGCCTGGCTCGCC
CTACCGGCCCCCAGTGCCACGGGCCCCCGACCCTGCCTACATCTATGATGAGTTCCTGCAGCAGCGCCGG
AGGCTGGTCAGCAAGCTGGACCTGGAGGAGCGCAGGCGGCGGGAGGCCCAGGAGAAAGGGTACTACTACG
ACCTCGATGACTCTTACGACGAGAGCGATGAGGAGGAGGTCAGGGCCCACCTCCGTTGCGTGGCCGAGCA
GCCGCCCCTCAAACTGGACACGTCCTCTGAGAAGCTAGAGTTTTTGCAACTTTTTGGCTTGACCACCCAA
CAGCAGAAGGAGGAATTGGTGGCCCAGAAGCGGAGGAAGCGGCGGAGGATGCTGCGAGAGAGAAGCCCGT
CGCCCCCAACAATTCAGAGCAAGCGGCAGACGCCTTCACCGAGACTGGCGCTGTCTACCCGCTACAGCCC
TGATGAGATGAACAACAGTCCCAACTTCGAAGAAAAGAAGAAGTTCCTGACCATCTTCAACCTGACCCAC
ATCAGCGCTGAGAAGAGGAAAGACAAAGAGAGACTTGTTGAAATGCTCCGTGCCATGAAGCAGAAGGCAC
TGTCAGCAGCAGTGGCCGACTCCTTGACAAACTCTCCGAGGGACAGTCCTGCCGTCTCCCTGAGTGAACC
AGCCACGCAGCAAGCCTCTCTGGATGTGGAGAAGCCGGTTGGTGTTGCTGCTTCCTTGTCTGACATCCCA
AAGGCCGCGGAGCCTGGGAAGCTGGAACAGGTCCGGCCCCAGGAGCTGTCGAGAGTCCAGGAGCTAGCTC
CTGCCAGCGGGGAGAAGGCCAGGCTGAGCGAGGCCCCTGGAGGCAAAAAGAGTCTGAGCATGCTTCACTA
TATCCGGGGCGCTGCACCCAAGGACATTCCTGTGCCGCTGTCCCACAGCACCAATGGGAAGAGCAAGCCG
TGGGAGCCCTTTGTGGCAGAAGAGTTTGCACATCAGTTCCACGAGTCAGTGCTGCAGTCCACCCAGAAGG
CCCTGCAGAAGCATAAAGGGAGCGTGGCTGTGCTGTCTGCAGAGCAGAACCACAAGGTTGACACGTCCGT
CCACTACAACATTCCTGAGCTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAG
CCCCCCACTGCAAGGAAGGGCCCCCCAACCCAGGAGTTGGACCGGGACTCGGAGGAGGAGGAAGAGGAGG
ATGATGAAGATGGAGAAGATGAGGAGGAAGTCCCCAAGCGCAAGTGGCAAGGGATCGAGGCCGTTTTTGA
AGCTTACCAGGAACACATAGAAGAGCAAAATCTGGAGCGGCAGGTGTTACAGACACAATGTAGACGACTG
GAGGCCCGGCACTACAGCCTCAGCCTGACGGCAGAGCAGCTCTCCCACAGCGTGGCGGAGTTGAGGAGCC
AGAAACAGAAGATGGTCTCAGAAAGGGAGCGGCTCCAGGCAGAACTGGACCACTTACGAAAGTGCCTTGC
CTTGCCTGCAATGCACTGGCCTAGGGGCTACCTGAAGGGATATCCCAGGTGA

Translation (1113 aa):
MGPIIVPPGGHSVPSTPPVVTIAPTKTVNGVWRSESRQDAGSRSSSGGRERLIVEPPLPQEKAGGPAIPS
HLLSTPYPFGLSPSSVVQDSRFPPLNLQRPVHHVVPPSTVTEDYLRSFRPYHTTDDLRMSSLPPLGLDPA
TAAAYYHPSYLAPHPFPHPAFRMDDSYCLSALRSPFYPIPTPGSLPPLHPSAMHLHLSGVRYPPELSHSS
LAALHSERMSGLSAERLQMDEELRREREREREREREREADREREKEREREREKEREQEKEREREKERERE
LERQREQRAREKELLAAKALEPSFLPVAELHGLRGHATEERGKPSEQLTPTRAEKLKDAGLQAPKPVQHP
LHPVPTPHHTVPSLISNHGIFSLPSSSAATALLIQRTNEEEKWLARQRRLRQEKEDRQSQVSEFRQQVLE
QHLDMGRPPVPAEAEHRPESTTRPGPNRHEPGGRDPPQHFGGPPPLISPKPQLHAAPTALWNPVSLMDNT
LETRRAESHSLHSHPAAFEPSRQAAVPLVKVERVFCPEKAEEGPRKREPAPLDKYQPPPPPPREGGSLEH
QPFLPGPGPFLAELEKSTQTILGQQRASLPQAATFGELSGPLKPGSPYRPPVPRAPDPAYIYDEFLQQRR
RLVSKLDLEERRRREAQEKGYYYDLDDSYDESDEEEVRAHLRCVAEQPPLKLDTSSEKLEFLQLFGLTTQ
QQKEELVAQKRRKRRRMLRERSPSPPTIQSKRQTPSPRLALSTRYSPDEMNNSPNFEEKKKFLTIFNLTH
ISAEKRKDKERLVEMLRAMKQKALSAAVADSLTNSPRDSPAVSLSEPATQQASLDVEKPVGVAASLSDIP
KAAEPGKLEQVRPQELSRVQELAPASGEKARLSEAPGGKKSLSMLHYIRGAAPKDIPVPLSHSTNGKSKP
WEPFVAEEFAHQFHESVLQSTQKALQKHKGSVAVLSAEQNHKVDTSVHYNIPELQSSSRAPPPQHNGQQE
PPTARKGPPTQELDRDSEEEEEEDDEDGEDEEEVPKRKWQGIEAVFEAYQEHIEEQNLERQVLQTQCRRL
EARHYSLSLTAEQLSHSVAELRSQKQKMVSERERLQAELDHLRKCLALPAMHWPRGYLKGYPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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