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Report for CCDS45557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45557.1 Public Homo sapiens 16 PRDM7 24 110 108 CCDS HistoryNCBI Gene:11105Re-query CCDS DB by CCDS ID:45557.1Re-query CCDS DB by GeneID:11105See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45557.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449207.8 ENSP00000396732.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000449207.8Link to Ensembl Protein Viewer:ENSP00000396732.2Re-query CCDS DB by Nucleotide ID:ENST00000449207Re-query CCDS DB by Protein ID:ENSP00000396732
Original member Current member NCBI NM_001098173.2 NP_001091643.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098173.2Link to Protein Sequence:NP_001091643.1Re-query CCDS DB by Nucleotide ID:NM_001098173Re-query CCDS DB by Protein ID:NP_001091643Link to BLAST:NP_001091643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091643.1 492 Q9NQW5-3 492 100% 0 0

Chromosomal Locations for CCDS 45557.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90058289 90058534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90060341 90060623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90061452 90061519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90061921 90062192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90062401 90062502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90063612 90063768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90066861 90066910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90074916 90075023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90075351 90075474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90075842 90075910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGAGCCCTGAAAGGTCCCAAGAGGAGAGCCCAGAAGGAGACACAGAGAGAACAGAGCGGAAGCCCATGG
TCAAAGATGCCTTCAAAGACATTTCCATATACTTCACCAAGGAAGAATGGGCAGAAATGGGAGACTGGGA
GAAAACTCGCTATAGGAATGTGAAAATGAACTATAATGCACTGATTACTGTAGGTCTCAGAGCCACTCGA
CCAGCTTTCATGTGTCACCGAAGGCAGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCCGATGAAG
AATGGACACCTAGGCAGCAAGTCAAACCTCCTTGGATGGCCTTCAGAGGAGAACAGAGTAAACACCAGAA
GGGAATGCCCAAGGCGTCATTCAATAATGAATCTAGTTTGAGAGAATTGTCAGGAACGCCAAATTTACTG
AATACAAGTGACTCAGAGCAGGCTCAGAAACCAGTGTCCCCTCCTGGAGAAGCAAGTACCTCTGGACAGC
ACTCTAGACTAAAACTGGAACTCAGGAGGAAGGAGACTGAAGGAAAGATGTATAGCCTGCGAGAAAGAAA
GGGTCATGCATACAAAGAGATCAGCGAGCCACAGGATGATGACTACCTCTATTGTGAGATGTGTCAGAAC
TTCTTCATTGACAGCTGTGCTGCTCATGGGCCCCCTACATTTGTAAAGGACAGTGCAGTGGACAAGGGGC
ATCCCAACCGTTCAGCCCTCAGTCTGCCCCCGGGGCTGAGAATTGGGCCATCAGGCATCCCTCAGGCTGG
GCTTGGAGTATGGAACGAGGCATCTGATCTGCCACTGGGTCTGCACTTTGGCCCCTATGAGGGCCGAATT
ACAGAAGACGAAGAGGCAGCCAACAGTGGATATTCCTGGCTAATCACCAAGGGGAGAAACTGCTATGAGT
ATGTGGATGGAAAAGATAAATCCTCGGCCAACTGGATGAGGTATGTGAACTGTGCCCGGGATGATGAAGA
GCAGAACCTGGTGGCCTTCCAGTACCACAGGCAGATCTTCTATAGAACCTGCCGAGTCATTAGGCCAGGC
TGTGAACTGCTGGTCTGGTCTGGGGATGAGTATGGCCAGGAACTGGGCATCAGATCTTCTATAGAACCTG
CCGAGTCATTAGGCCAGGCTGTGAACTGCTGGTCTGGTATGGGGATGAGTATGGCCAGGAACTGGGCATC
AAGTGGGGCAGCAAGTGGAAGAAAGAGCTCATGGCAGGGAGAGAACCAAAGCCAGAGATCCATCCATGTC
CCTCATGCTGTCTGGCCTTTTCAAGTCAAAAATTTCTCAGTCAACATGTGGAACGCAATCACTCCTCTCA
GAACTTCCCAGGACCATCTGCAAGAAAACTTCTCCAACCAGAGAATCCCTGCCCAGGGGATCAGAATCAG
GAGCGGCAATATTCTGATCCACGCTGCTGTAATGACAAAACCAAAGGTCAAGAGATCAAAGAAAGGTCCA
AACTCTTGA

Translation (492 aa):
MSPERSQEESPEGDTERTERKPMVKDAFKDISIYFTKEEWAEMGDWEKTRYRNVKMNYNALITVGLRATR
PAFMCHRRQAIKLQVDDTEDSDEEWTPRQQVKPPWMAFRGEQSKHQKGMPKASFNNESSLRELSGTPNLL
NTSDSEQAQKPVSPPGEASTSGQHSRLKLELRRKETEGKMYSLRERKGHAYKEISEPQDDDYLYCEMCQN
FFIDSCAAHGPPTFVKDSAVDKGHPNRSALSLPPGLRIGPSGIPQAGLGVWNEASDLPLGLHFGPYEGRI
TEDEEAANSGYSWLITKGRNCYEYVDGKDKSSANWMRYVNCARDDEEQNLVAFQYHRQIFYRTCRVIRPG
CELLVWSGDEYGQELGIRSSIEPAESLGQAVNCWSGMGMSMARNWASSGAASGRKSSWQGENQSQRSIHV
PHAVWPFQVKNFSVNMWNAITPLRTSQDHLQENFSNQRIPAQGIRIRSGNILIHAAVMTKPKVKRSKKGP
NS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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