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Report for CCDS45583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45583.1 Public Homo sapiens 17 SMTNL2 24 110 108 CCDS HistoryNCBI Gene:342527Re-query CCDS DB by CCDS ID:45583.1Re-query CCDS DB by GeneID:342527See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45583.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389313.9 ENSP00000373964.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000389313.9Link to Ensembl Protein Viewer:ENSP00000373964.4Re-query CCDS DB by Nucleotide ID:ENST00000389313Re-query CCDS DB by Protein ID:ENSP00000373964
Original member Current member NCBI NM_001114974.2 NP_001108446.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001114974.2Link to Protein Sequence:NP_001108446.1Re-query CCDS DB by Nucleotide ID:NM_001114974Re-query CCDS DB by Protein ID:NP_001108446Link to BLAST:NP_001108446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108446.1 461 Q2TAL5-1 461 100% 0 0

Chromosomal Locations for CCDS 45583.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4584606 4585004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4592361 4592448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4592929 4593171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4593822 4593897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4595145 4595327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4596860 4596977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4597172 4597323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4607361 4607487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGAGCCGGCCCCCGACGCCCAGGAGGCGCGCACTGTGCGCGAGGCGCTGGGCCGCTACGAGGCGGCGC
TGGAGGGTGCGGTGCGCGCGCTGCACGAGGACATGCGGGGGCTGCAGCGCGGCGTGGAGCGGCGAGTGGC
AGAGGCGATGCGCCTGGCCGGCCCCCTGGCGCGCACGGTGGCCGACCTGCAGCGGGACAACCAGCGGCTG
CAGGCGCAGCTCGAGCGCCTGACGCGCCAGGTGGAGGCGCTGGGCTTGGCCAGCGGGATGTCCCCGGTGC
CCGGCACTCCCGGCACGCCCAGCCCCCCGCCCGCGCCCGGGGTTCCCGACCGCGCGCCCCGCCTGGGCAG
CGCACGCTTCGCCAGCCACGCCACCTTCTCGCTGTCCGGCCGCGGCCAGAGTTTGGATCACGATGAGGCC
AGTGAGTCGGAGATGAGAAAGACCTCAAACTCCTGCATCATGGAAAATGGGCACCAGCCGGGGGCAGGTC
CAGGCGATGGACCCCCTGAGATTGCCCAAAACTTCTCAGCACCAGATCCCCCCAGGCCTCGTCCTGTGAG
CCTCTCCTTGCGGCTGCCCCACCAGCCAGTCACGGCCATCACCCGAGTCTCTGACAGGTTCTCTGGGGAG
ACCTCAGCTGCGGCTCTATCACCCATGTCTGCTGCCACCCTGGGGGGCCTCAACCCAAGCCCCAGCGAGG
TCATCACGCCCTGGACTCCCAGTCCTAGCGAGAAGAATTCCTCTTTCACGTGGTCTGTGCCAAGCTCTGG
CTATGGGGCAGTGACAGCAAGCAAACACAGCAATAGCCCACCGCTGGTGACACCACCCCAGTCGCCCGTG
TCCCCGCAGCCGCCAGCCATAACTCAGGTCCATCGGCAGGGGGAGCGTCGCAGGGAGCTGGTGAGGTCGC
AGACGCTGCCCCGCACCTCGGAGGCGCAGGCCCGGAAAGCATTGTTTGAGAAGTGGGAGCAGGAAACGGC
GGCCGGCAAGGGGAAAGGCGAGGCCCGGGCCAGGCTGAAGCGGTCGCAGAGCTTCGGCGTGGCCAGCGCC
AGCAGCATCAAGCAGATCCTGCTCGAGTGGTGCCGCAGCAAGACGCTGGGCTACCAGCACGTGGACCTGC
AGAACTTCTCCTCCAGCTGGAGCGACGGCATGGCCTTCTGCGCCCTGGTACACTCCTTCTTCCCCGATGC
CTTTGACTACAACTCCCTGAGCCCCACGCAGAGGCAGAAGAACTTCGAGCTGGCTTTCACCATGGCCGAG
AATCTGGCCAACTGTGAGCGCCTCATCGAAGTGGAGGACATGATGGTGATGGGCCGCAAGCCGGACCCCA
TGTGTGTCTTCACCTACGTCCAGTCGCTGTACAACCACCTGCGTCGCTTCGAGTAA

Translation (461 aa):
MEPAPDAQEARTVREALGRYEAALEGAVRALHEDMRGLQRGVERRVAEAMRLAGPLARTVADLQRDNQRL
QAQLERLTRQVEALGLASGMSPVPGTPGTPSPPPAPGVPDRAPRLGSARFASHATFSLSGRGQSLDHDEA
SESEMRKTSNSCIMENGHQPGAGPGDGPPEIAQNFSAPDPPRPRPVSLSLRLPHQPVTAITRVSDRFSGE
TSAAALSPMSAATLGGLNPSPSEVITPWTPSPSEKNSSFTWSVPSSGYGAVTASKHSNSPPLVTPPQSPV
SPQPPAITQVHRQGERRRELVRSQTLPRTSEAQARKALFEKWEQETAAGKGKGEARARLKRSQSFGVASA
SSIKQILLEWCRSKTLGYQHVDLQNFSSSWSDGMAFCALVHSFFPDAFDYNSLSPTQRQKNFELAFTMAE
NLANCERLIEVEDMMVMGRKPDPMCVFTYVQSLYNHLRRFE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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