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Report for CCDS4565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4565.1 Public Homo sapiens 6 SLC17A1 24 110 108 CCDS HistoryNCBI Gene:6568Re-query CCDS DB by CCDS ID:4565.1Re-query CCDS DB by GeneID:6568See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244527.10 ENSP00000244527.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244527.10Link to Ensembl Protein Viewer:ENSP00000244527.4Re-query CCDS DB by Nucleotide ID:ENST00000244527Re-query CCDS DB by Protein ID:ENSP00000244527
Original member Current member EBI ENST00000476801.5 ENSP00000420614.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000476801.5Link to Ensembl Protein Viewer:ENSP00000420614.1Re-query CCDS DB by Nucleotide ID:ENST00000476801Re-query CCDS DB by Protein ID:ENSP00000420614
Original member Current member NCBI NM_005074.5 NP_005065.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005074.5Link to Protein Sequence:NP_005065.2Re-query CCDS DB by Nucleotide ID:NM_005074Re-query CCDS DB by Protein ID:NP_005065Link to BLAST:NP_005065.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005065.2 467 Q14916-1 467 100% 0 0

Chromosomal Locations for CCDS 4565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 25798785 25798919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25800890 25800980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25811398 25811545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25811638 25811770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25812831 25812992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25813095 25813213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25819068 25819154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25819511 25819598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25819682 25819915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25826461 25826633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25830524 25830557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGCAAATGGATAACCGGTTGCCTCCCAAAAAAGTTCCAGGTTTCTGTTCCTTTCGCTATGGATTGTCTT
TCCTTGTGCACTGTTGTAATGTTATAATAACAGCACAGCGTGCGTGCCTGAACCTCACAATGGTAGTCAT
GGTGAATAGCACAGATCCACATGGTTTGCCCAACACCTCCACAAAGAAGCTCCTGGATAATATAAAGAAC
CCTATGTATAATTGGAGCCCAGATATCCAGGGAATCATCTTGAGTTCCACCTCCTATGGTGTCATCATCA
TCCAAGTTCCTGTTGGATACTTCTCTGGAATATATTCTACAAAGAAAATGATTGGCTTTGCATTATGCCT
CAGCTCTGTGTTAAGCCTGCTCATCCCACCAGCAGCTGGAATTGGAGTAGCTTGGGTCGTTGTATGTCGA
GCAGTTCAGGGAGCAGCCCAGGGGATAGTTGCAACAGCCCAGTTTGAAATATATGTCAAATGGGCTCCTC
CCCTGGAACGAGGCCGACTTACTTCTATGAGTACATCAGGGTTTTTGCTGGGACCCTTTATTGTCCTACT
TGTGACTGGAGTTATCTGTGAATCTCTGGGCTGGCCCATGGTCTTCTATATTTTTGGTGCTTGTGGCTGT
GCCGTATGTCTTCTCTGGTTCGTTCTGTTTTATGATGACCCCAAAGACCACCCATGTATAAGCATCAGTG
AAAAGGAATACATCACATCCTCCCTGGTCCAGCAGGTCAGTTCAAGTAGACAATCTCTGCCTATCAAGGC
TATACTTAAGTCGCTTCCAGTCTGGGCTATTTCCACTGGTAGTTTTACGTTTTTCTGGTCACATAACATC
ATGACACTATACACTCCAATGTTTATCAACTCCATGCTTCATGTTAATATAAAAGAGAATGGGTTCTTGT
CTTCCCTTCCCTATTTGTTTGCCTGGATCTGTGGTAACCTAGCAGGTCAGTTATCAGACTTCTTCCTGAC
CAGGAATATTCTCAGCGTAATTGCTGTCCGGAAACTCTTCACAGCAGCAGGATTTCTCCTTCCTGCAATC
TTTGGTGTCTGCCTGCCTTACCTGAGTTCCACCTTCTACAGCATTGTCATTTTCCTAATACTTGCTGGTG
CAACAGGCAGCTTTTGCTTGGGTGGAGTGTTTATAAATGGCTTGGATATTGCTCCCAGATATTTTGGATT
TATTAAAGCATGTTCAACTTTAACTGGAATGATAGGAGGACTAATTGCTTCCACTTTGACTGGATTGATC
CTTAAGCAGGATCCGGAATCCGCCTGGTTTAAAACCTTCATCCTGATGGCAGCCATTAATGTGACTGGCC
TAATTTTCTACCTTATAGTTGCTACAGCAGAAATTCAGGACTGGGCTAAAGAAAAACAACACACACGTCT
CTGA

Translation (467 aa):
MQMDNRLPPKKVPGFCSFRYGLSFLVHCCNVIITAQRACLNLTMVVMVNSTDPHGLPNTSTKKLLDNIKN
PMYNWSPDIQGIILSSTSYGVIIIQVPVGYFSGIYSTKKMIGFALCLSSVLSLLIPPAAGIGVAWVVVCR
AVQGAAQGIVATAQFEIYVKWAPPLERGRLTSMSTSGFLLGPFIVLLVTGVICESLGWPMVFYIFGACGC
AVCLLWFVLFYDDPKDHPCISISEKEYITSSLVQQVSSSRQSLPIKAILKSLPVWAISTGSFTFFWSHNI
MTLYTPMFINSMLHVNIKENGFLSSLPYLFAWICGNLAGQLSDFFLTRNILSVIAVRKLFTAAGFLLPAI
FGVCLPYLSSTFYSIVIFLILAGATGSFCLGGVFINGLDIAPRYFGFIKACSTLTGMIGGLIASTLTGLI
LKQDPESAWFKTFILMAAINVTGLIFYLIVATAEIQDWAKEKQHTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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