NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4566.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4566.2 Public Homo sapiens 6 SLC17A3 24 110 108 CCDS HistoryNCBI Gene:10786Re-query CCDS DB by CCDS ID:4566.2Re-query CCDS DB by GeneID:10786See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4566.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360657.7 ENSP00000353873.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360657.7Link to Ensembl Protein Viewer:ENSP00000353873.3Re-query CCDS DB by Nucleotide ID:ENST00000360657Re-query CCDS DB by Protein ID:ENSP00000353873
Original member Current member EBI ENST00000361703.10 ENSP00000355307.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361703.10Link to Ensembl Protein Viewer:ENSP00000355307.6Re-query CCDS DB by Nucleotide ID:ENST00000361703Re-query CCDS DB by Protein ID:ENSP00000355307
Original member Current member NCBI NM_006632.4 NP_006623.2 Accepted alive Link to Nucleotide Sequence:NM_006632.4Link to Protein Sequence:NP_006623.2Re-query CCDS DB by Nucleotide ID:NM_006632Re-query CCDS DB by Protein ID:NP_006623Link to BLAST:NP_006623.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006623.2 420 O00476-1 420 100% 0 0

Chromosomal Locations for CCDS 4566.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 25845382 25845516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25849374 25849464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25849805 25849952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25850048 25850177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25850459 25850620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25850759 25850877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25855144 25855230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25861624 25861711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25862233 25862444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25868297 25868387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCCACCAAGACAGAGTTGAGTCCCACAGCAAGGGAGAGCAAGAACGCACAAGATATGCAAGTGGATG
AGACACTGATCCCCAGGAAAGTTCCAAGTTTATGTTCTGCTCGCTATGGAATAGCCCTCGTCTTACATTT
CTGCAATTTCACAACGATAGCACAAAATGTCATCATGAACATCACCATGGTAGCCATGGTCAACAGCACA
AGCCCTCAATCCCAGCTCAATGATTCCTCTGAGGTGCTGCCTGTTGACTCATTTGGTGGCCTAAGTAAAG
CCCCAAAGAGTCTTCCTGCAAAGTCCTCAATACTTGGGGGTCAGTTTGCAATTTGGGAAAAGTGGGGCCC
TCCACAAGAACGAAGCAGACTCTGCAGCATTGCTTTATCAGGAATGTTACTGGGATGCTTTACTGCCATC
CTCATAGGTGGCTTCATTAGTGAAACCCTTGGGTGGCCCTTTGTCTTCTATATCTTTGGAGGTGTTGGCT
GTGTCTGCTGCCTTCTCTGGTTTGTTGTGATTTATGATGACCCCGTTTCCTATCCATGGATAAGCACCTC
AGAAAAAGAATACATCATATCCTCCTTGAAACAACAGGTCGGGTCTTCTAAGCAGCCTCTTCCCATCAAA
GCTATGCTCAGATCTCTACCCATTTGGTCCATATGTTTAGGCTGTTTCAGCCATCAATGGTTAGTTAGCA
CAATGGTTGTATACATACCAACTTACATCAGCTCTGTGTACCATGTTAACATCAGAGACAATGGACTTCT
ATCTGCCCTTCCTTTTATTGTTGCCTGGGTCATAGGCATGGTGGGAGGCTATCTGGCAGATTTCCTTCTA
ACCAAAAAGTTTAGACTCATCACTGTGAGGAAAATTGCCACAATTTTAGGAAGTCTCCCCTCTTCAGCAC
TCATTGTGTCTCTGCCTTACCTCAATTCCGGCTATATCACAGCAACTGCCTTGCTGACGCTCTCTTGCGG
ATTAAGCACATTGTGTCAGTCAGGGATTTATATCAATGTCTTAGATATTGCTCCAAGGTATTCCAGTTTT
CTCATGGGAGCATCAAGAGGATTTTCGAGCATAGCACCTGTCATTGTACCCACTGTCAGTGGATTTCTTC
TTAGTCAGGACCCTGAGTTTGGGTGGAGGAATGTCTTCTTCTTGCTGTTTGCCGTTAACCTGTTAGGACT
ACTCTTCTACCTCATATTTGGAGAAGCAGATGTCCAAGAATGGGCTAAAGAGAGAAAACTCACTCGTTTA
TGA

Translation (420 aa):
MATKTELSPTARESKNAQDMQVDETLIPRKVPSLCSARYGIALVLHFCNFTTIAQNVIMNITMVAMVNST
SPQSQLNDSSEVLPVDSFGGLSKAPKSLPAKSSILGGQFAIWEKWGPPQERSRLCSIALSGMLLGCFTAI
LIGGFISETLGWPFVFYIFGGVGCVCCLLWFVVIYDDPVSYPWISTSEKEYIISSLKQQVGSSKQPLPIK
AMLRSLPIWSICLGCFSHQWLVSTMVVYIPTYISSVYHVNIRDNGLLSALPFIVAWVIGMVGGYLADFLL
TKKFRLITVRKIATILGSLPSSALIVSLPYLNSGYITATALLTLSCGLSTLCQSGIYINVLDIAPRYSSF
LMGASRGFSSIAPVIVPTVSGFLLSQDPEFGWRNVFFLLFAVNLLGLLFYLIFGEADVQEWAKERKLTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH