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Report for CCDS45706.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45706.2 Public Homo sapiens 17 DBF4B 24 110 108 CCDS HistoryNCBI Gene:80174Re-query CCDS DB by CCDS ID:45706.2Re-query CCDS DB by GeneID:80174See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 45706.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45706.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393547.6 ENSP00000377178.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393547.6Link to Ensembl Protein Viewer:ENSP00000377178.2Re-query CCDS DB by Nucleotide ID:ENST00000393547Re-query CCDS DB by Protein ID:ENSP00000377178
Original member Current member NCBI NM_025104.4 NP_079380.2 Accepted alive Link to Nucleotide Sequence:NM_025104.4Link to Protein Sequence:NP_079380.2Re-query CCDS DB by Nucleotide ID:NM_025104Re-query CCDS DB by Protein ID:NP_079380Link to BLAST:NP_079380.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079380.2 431 Q8NFT6-2 431 100% 0 0

Chromosomal Locations for CCDS 45706.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44708821 44708839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44709304 44709366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44722880 44723022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44729905 44730096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44730965 44731015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44732178 44732265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44734090 44734163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44736830 44736866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44738379 44738424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44741336 44741452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44747083 44747191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44747391 44747515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44748341 44748465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44750595 44750677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44751940 44751963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGAGCGAACCGGGAAAGGGAGACGATTGCCTCGAGCTGGAGAGTTCCATGGCTGAGAGTAGGCTCCGGG
CCCCGGACCTAGGAGTTTCCAGGTGTCTAGGAAAATGCCAGAAGAACTCACCAGGTGCCAGGAAGCATCC
CTTTTCCGGAAAGTCCTTTTACTTGGATCTGCCTGCTGGCAAGAATCTCCAGTTTTTGACGGGGGCCATT
CAGCAACTGGGTGGGGTAATTGAGGGTTTTCTGAGCAAAGAAGTAAGTTACATCGTGTCCAGCCGCAGAG
AAGTAAAGGCAGAGAGCAGTGGGAAAAGCCATAGAGGCTGCCCTAGCCCTAGCCCCAGTGAGGTCAGAGT
GGAAACATCGGCCATGGTTGATCCAAAAGGCAGCCACCCCAGGCCTTCACGGAAACCCGTTGACTCGGTG
CCTCTAAGCAGAGGGAAGGAGCTGCTGCAGAAGGCTATCAGAAACCAGGGGAGCATCAGTGGAGGAGGCA
GTGGGGGCAGCAGCAGCCTCCTGACCAATGCCCGCTCTTGGGGAGTGAGGATTCTGCACGTGGATGAAAT
GATGATGCACGTGCAACAGCTGTCTCTTGCGTCTTTATGTGTGAAAAAACAACAGCCAAAGAAGCCAGAG
GGAACATGTCCAGCAGCAGAGTCAAGAACACGGAAAGTGGCCAGACTGAAGGCCCCGTTCCTCAAAATCG
AAGATGAAAGCAGGAAGTTTCGTCCTTTCCATCATCAGTTTAAATCCTTTCCTGAAATTTCTTTTCTTGG
ACCCAAAGATGCAAGTCCCTTTGAGGCCCCGACGACCCTGGGCAGCATGCACCATACCAGAGAATCCAAG
GATGGAGAGCCAAGCCCACGATCAGCTGCCCACACCATGCCCAGGAGGAAGAAAGGCTACTGCGAGTGCT
GTCAGGAGGCCTTCGAGGAGCTCCATGTGCATCTTCAGAGTGCCCAGCACCGGAGCTTTGCCCTGGAAGC
CCATCTATATGCAGAAGTGGACAGGATCATTGCTCAGCTCAGCCACAGCTTTGCAGACATCCCTTTCCAG
GCTGGCCTCCCCAGGTGGTCAGGTTCCCCAGCTTCTGATTGTGACCCTCTCTGTCCTGAGACTCTGCACC
CCCATCAGCCCTCCCATCCCAGGGCAGCATCTCCCAGGATAAGGAAAGAAGACAGCTGCCAGGCATCAGT
GACCCAAGGCAGGGCTGCGGGCCAGCAGCGATGGACAGAATCACTAGATGGTGTGATGGGACCTCCTGCA
AGTCACACATGTCACAGGCCTTGCCGTCTGCCCTGA

Translation (431 aa):
MSEPGKGDDCLELESSMAESRLRAPDLGVSRCLGKCQKNSPGARKHPFSGKSFYLDLPAGKNLQFLTGAI
QQLGGVIEGFLSKEVSYIVSSRREVKAESSGKSHRGCPSPSPSEVRVETSAMVDPKGSHPRPSRKPVDSV
PLSRGKELLQKAIRNQGSISGGGSGGSSSLLTNARSWGVRILHVDEMMMHVQQLSLASLCVKKQQPKKPE
GTCPAAESRTRKVARLKAPFLKIEDESRKFRPFHHQFKSFPEISFLGPKDASPFEAPTTLGSMHHTRESK
DGEPSPRSAAHTMPRRKKGYCECCQEAFEELHVHLQSAQHRSFALEAHLYAEVDRIIAQLSHSFADIPFQ
AGLPRWSGSPASDCDPLCPETLHPHQPSHPRAASPRIRKEDSCQASVTQGRAAGQQRWTESLDGVMGPPA
SHTCHRPCRLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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