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Report for CCDS45860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45860.1 Public Homo sapiens 18 SLC14A1 24 110 108 CCDS HistoryNCBI Gene:6563Re-query CCDS DB by CCDS ID:45860.1Re-query CCDS DB by GeneID:6563See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45860.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436407.7 ENSP00000390637.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000436407.7Link to Ensembl Protein Viewer:ENSP00000390637.2Re-query CCDS DB by Nucleotide ID:ENST00000436407Re-query CCDS DB by Protein ID:ENSP00000390637
Original member Current member EBI ENST00000415427.7 ENSP00000412309.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415427.7Link to Ensembl Protein Viewer:ENSP00000412309.2Re-query CCDS DB by Nucleotide ID:ENST00000415427Re-query CCDS DB by Protein ID:ENSP00000412309
Original member Current member NCBI NM_001128588.4 NP_001122060.3 Accepted alive Link to Nucleotide Sequence:NM_001128588.4Link to Protein Sequence:NP_001122060.3Re-query CCDS DB by Nucleotide ID:NM_001128588Re-query CCDS DB by Protein ID:NP_001122060Link to BLAST:NP_001122060.3
Original member Current member NCBI NM_001146037.1 NP_001139509.1 Accepted alive Link to Nucleotide Sequence:NM_001146037.1Link to Protein Sequence:NP_001139509.1Re-query CCDS DB by Nucleotide ID:NM_001146037Re-query CCDS DB by Protein ID:NP_001139509Link to BLAST:NP_001139509.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122060.3 445 Q13336-2 445 100% 0 0
NP_001139509.1 445 Q13336-2 445 100% 0 0

Chromosomal Locations for CCDS 45860.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 45727272 45727418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45730300 45730471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45731015 45731204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45734274 45734402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45736456 45736648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45739163 45739310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45739528 45739662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45748376 45748425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 45749778 45749951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGAATGGACGGTCTTTGATTGGCGGCGCTGGTGACGCCCGTCATGGTCCTGTTTGGAAGGACCCTTTTG
GAACTAAAGCTGGTGACGCAGCGCGCAGAGGCATCGCCCGGCTAAGCTTGGCCCTGGCAGATGGGTCGCA
GGAACAGGAGCCAGAGGAAGAGATAGCCATGGAGGACAGCCCCACTATGGTTAGAGTGGACAGCCCCACT
ATGGTTAGGGGTGAAAACCAGGTTTCGCCATGTCAAGGGAGAAGGTGCTTCCCCAAAGCTCTTGGCTATG
TCACCGGTGACATGAAAGAACTTGCCAACCAGCTTAAAGACAAACCCGTGGTGCTCCAGTTCATTGACTG
GATTCTCCGGGGCATATCCCAAGTGGTGTTCGTCAACAACCCCGTCAGTGGAATCCTGATTCTGGTAGGA
CTTCTTGTTCAGAACCCCTGGTGGGCTCTCACTGGCTGGCTGGGAACAGTGGTCTCCACTCTGATGGCCC
TCTTGCTCAGCCAGGACAGGTCATTAATAGCATCTGGGCTCTATGGCTACAATGCCACCCTGGTGGGAGT
ACTCATGGCTGTCTTTTCGGACAAGGGAGACTATTTCTGGTGGCTGTTACTCCCTGTATGTGCTATGTCC
ATGACTTGCCCAATTTTCTCAAGTGCATTGAATTCCATGCTCAGCAAATGGGACCTCCCCGTCTTCACCC
TCCCTTTCAACATGGCGTTGTCAATGTACCTTTCAGCCACAGGACATTACAATCCATTCTTTCCAGCCAA
ACTGGTCATACCTATAACTACAGCTCCAAATATCTCCTGGTCTGACCTCAGTGCCCTGGAGTTGTTGAAA
TCTATACCAGTGGGAGTTGGTCAGATCTATGGCTGTGATAATCCATGGACAGGGGGCATTTTCCTGGGAG
CCATCCTACTCTCCTCCCCACTCATGTGCCTGCATGCTGCCATAGGATCATTGCTGGGCATAGCAGCGGG
ACTCAGTCTTTCAGCCCCATTTGAGGACATCTACTTTGGACTCTGGGGTTTCAACAGCTCTCTGGCCTGC
ATTGCAATGGGAGGAATGTTCATGGCGCTCACCTGGCAAACCCACCTCCTGGCTCTTGGCTGTGCCCTGT
TCACGGCCTATCTTGGAGTCGGCATGGCAAACTTTATGGCTGAGGTTGGATTGCCAGCTTGTACCTGGCC
CTTCTGTTTGGCCACGCTATTGTTCCTCATCATGACCACAAAAAATTCCAACATCTACAAGATGCCCCTC
AGTAAAGTTACTTATCCTGAAGAAAACCGCATCTTCTACCTGCAAGCCAAGAAAAGAATGGTGGAAAGCC
CTTTGTGA

Translation (445 aa):
MNGRSLIGGAGDARHGPVWKDPFGTKAGDAARRGIARLSLALADGSQEQEPEEEIAMEDSPTMVRVDSPT
MVRGENQVSPCQGRRCFPKALGYVTGDMKELANQLKDKPVVLQFIDWILRGISQVVFVNNPVSGILILVG
LLVQNPWWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMS
MTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALELLK
SIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFEDIYFGLWGFNSSLAC
IAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPL
SKVTYPEENRIFYLQAKKRMVESPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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