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Report for CCDS45861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45861.1 Public Homo sapiens 18 LOXHD1 24 110 108 CCDS HistoryNCBI Gene:125336Re-query CCDS DB by CCDS ID:45861.1Re-query CCDS DB by GeneID:125336See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45861.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300591.11 ENSP00000300591.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000300591.11Link to Ensembl Protein Viewer:ENSP00000300591.6Re-query CCDS DB by Nucleotide ID:ENST00000300591Re-query CCDS DB by Protein ID:ENSP00000300591
Original member Current member NCBI NM_001145472.3 NP_001138944.1 Accepted alive Link to Nucleotide Sequence:NM_001145472.3Link to Protein Sequence:NP_001138944.1Re-query CCDS DB by Nucleotide ID:NM_001145472Re-query CCDS DB by Protein ID:NP_001138944Link to BLAST:NP_001138944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138944.1 1114 Q8IVV2-3 1114 100% 0 0

Chromosomal Locations for CCDS 45861.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46477183 46477220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46477654 46477952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46483587 46483745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46485019 46485151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46488972 46489142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46505838 46506023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46507538 46507712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46509698 46509815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46518129 46518256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46521097 46521282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46522101 46522309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46524466 46524601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46524708 46524917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46529177 46529331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46533162 46533324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46534335 46534451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46538156 46538337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46541776 46541940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46542727 46542855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46545317 46545421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46546895 46547058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46557356 46557372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3345 nt):
ATGAACAACGAGATCACGTACTACTTTCCATGCCAACGTTGGCTGGCAGTGGAGGAAGATGATGGCCAGC
TGTCCAGGGAGCTGTTGCCAGTGGATGAGTCCTATGTGCTGCCACAGAGCGAGGAGGGTAGGGGAGGCGG
TGACAACAACCCCCTCGACAACCTGGCCCTGGAGCAGAAAGATAAATCTACCACATTCTCAGTGACCATA
AAGACTGGGGTTAAGAAGAATGCGGGCACAGATGCTAATGTCTTCATCACACTCTTTGGCACACAGGATG
ACACTGGAATGACCCTCCTGAAGTCCTCCAAGACAAACAGCGATAAGTTTGAGAGGGACAGCATTGAAAT
CTTCACGGTGGAGACGCTGGATCTGGGAGACCTGTGGAAAGTCCGGCTTGGCCATGACAACACAGGCAAG
GCCCCAGGCTGGTTTGTAGACTGGGTAGAGGTGGATGCCCCATCTCTTGGGAAGTGCATGACGTTTCCCT
GTGGCCGCTGGCTGGCCAAAAACGAAGACGACGGGTCCATCATCAGAGACCTCTTCCATGCAGAGCTTCA
GACGAGGCTGTACACACCATTTGTTCCTTACGAGATCACCCTCTACACCAGTGATGTCTTTGCTGCTGGG
ACAGATGCCAACATCTTCATCATCATCTATGGCTGCGATGCCGTGTGCACCCAGCAGAAGTATCTGTGTA
CCAACAAGAGGGAACAGAAGCAGTTCTTTGAGAGGAAGTCTGCCTCCCGCTTCATCGTAGAGTTAGAAGA
TGTGGGAGAAATCATTGAAAAAATTCGGATTGGCCATAATAACACGGGCATGAATCCTGGGTGGCACTGC
TCTCACGTGGACATCCGCAGGCTCCTCCCGGATAAAGACGGTGCAGAGACCTTGACTTTCCCATGCGATC
GGTGGCTTGCCACCTCTGAGGATGACAAAAAGACCATTCGAGAACTGGTTCCATATGACATCTTCACTGA
GAAATACATGAAAGATGGGTCCTTACGGCAAGTCTACAAGGAAGTAGAAGAGCCTCTGGACATTGTGCTG
TACTCGGTGCAGATCTTCACAGGGAACATTCCTGGGGCAGGGACGGATGCCAAGGTGTACATCACCATCT
ATGGAGACCTCGGGGACACTGGGGAGCGATACCTTGGCAAGTCAGAGAACCGGACCAACAAGTTCGAGAG
AGGAACGGCTGACACCTTCATCATCGAGGCCGCTGACCTAGGCGTCATCTACAAGATCAAGCTCCGCCAT
GACAACTCCAAGTGGTGCGCAGACTGGTACGTGGAGAAGGTGGAGATCTGGAATGACACCAACGAGGACG
AGTTCCTGTTCCTATGCGGGCGCTGGCTCTCCCTGAAGAAGGAGGATGGGCGACTCGAGAGGCTCTTTTA
CGAGAAGGAGTACACTGGGGACCGCAGCAGCAACTGCAGCAGCCCTGCTGACTTCTGGGAGATCGCCCTG
AGCTCCAAGATGGCCGATGTCGACATCAGCACAGTGACCGGGCCCATGGCTGACTACGTTCAAGAGGGCC
CAATTATTCCCTACTATGTGTCAGTCACCACTGGGAAGCACAAGGACGCGGCCACTGACAGCCGAGCCTT
CATCTTTCTCATCGGGGAGGATGATGAACGTAGTAAGCGCATCTGGTTGGACTACCCCCGAGGGAAGAGG
GGCTTCAGCCGTGGCTCTGTGGAGGAGTTCTACGTCGCAGGCTTGGATGTGGGCATCATCAAGAAAATAG
AGCTGGGCCATGACGGGGCCTCCCCTGAGAGCTGCTGGCTGGTGGAAGAGTTGTGTTTGGCAGTGCCCAC
CCAGGGCACCAAGTACATGTTGAACTGTAACTGCTGGCTGGCCAAGGACAGAGGCGACGGCATCACCTCC
CGTGTCTTCGACCTCTTGGATGCCATGGTGGTGAACATTGGGGTGAAGGTTCTCTATGAAATGACGGTGT
GGACAGGGGATGTGGTTGGCGGGGGCACTGACTCCAACATCTTCATGACCCTCTACGGCATCAACGGGAG
CACAGAGGAGATGCAGCTGGACAAAAAGAAAGCCAGGTTTGAGCGGGAGCAGAACGACACCTTCATCATG
GAGATCCTAGACATTGCTCCATTCACCAAGATGCGGATCCGGATTGATGGCCTGGGCAGTCGGCCGGAGT
GGTTCCTGGAGAGGATCCTACTGAAGAACATGAACACTGGAGACCTGACCATGTTCTACTATGGAGACTG
GCTGTCCCAGCGGAAGGGCAAGAAGACCCTGGTGTGTGAAATGTGTGCCGTTATCGATGAGGAAGAAATG
ATGGAGTGGACCTCCTACACCGTCGCAGTTAAGACCAGCGACATCCTGGGAGCAGGCACTGATGCCAACG
TGTTCATCATCATCTTCGGGGAGAACGGGGATAGTGGGACACTGGCCCTGAAGCAGTCGGCAAACTGGAA
CAAGTTTGAGCGGAACAACACGGACACATTCAACTTCCCTGACATGCTGAGCTTGGGCCACCTCTGCAAG
CTGAGGGTCTGGCACGACAACAAAGGGATATTTCCTGGCTGGCATCTGAGCTATGTCGATGTGAAGGACA
ACTCCCGCGACGAGACCTTCCACTTCCAGTGTGACTGCTGGCTCTCCAAGAGTGAGGGTGACGGGCAGAC
GGTCCGCGACTTTGCCTGTGCCAACAACAAGATCTGTGATGAGCTGGAAGAGACCACCTACGAGATCGTC
ATAGAAACGGGCAACGGAGGCGAAACCAGGGAGAACGTCTGGCTCATCCTGGAGGGCAGGAAGAACCGAT
CCAAAGAGTTTCTCATGGAAAATTCTTCTAGGCAGCGGGCCTTTAGGAAGGGGACCACAGACACGTTTGA
GTTTGACAGCATCTACTTGGGGGACATTGCCTCCCTCTGTGTGGGCCACCTTGCCAGGGAAGACCGGTTT
ATCCCCAAGAGAGAACTTGCCTGGCATGTCAAGACCATCACCATCACCGAGATGGAGTACGGCAATGTGT
ACTTCTTTAACTGTGACTGCCTCATCCCCCTCAAGAGGAAGAGGAAGTACTTCAAGGTATTCGAGGTTAC
CAAGACGACAGAGAGCTTTGCCAGCAAGGTCCAGAGCCTGGTGCCCGTCAAGTACGAAGTCATCGTGACA
ACAGGCTATGAGCCAGGGGCAGGCACTGATGCCAACGTCTTCGTGACCATCTTTGGGGCCAACGGAGACA
CAGGCAAGCGGGAGCTGAAGCAGAAAATGCGCAACCTCTTCGAGCGGGGCAGCACAGACCGCTTCTTCCT
GGAGACGCTGGAGCTGGTAGTGACCAGGCTGGGACTTGCTGCAGAGTGTGGATGA

Translation (1114 aa):
MNNEITYYFPCQRWLAVEEDDGQLSRELLPVDESYVLPQSEEGRGGGDNNPLDNLALEQKDKSTTFSVTI
KTGVKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDKFERDSIEIFTVETLDLGDLWKVRLGHDNTGK
APGWFVDWVEVDAPSLGKCMTFPCGRWLAKNEDDGSIIRDLFHAELQTRLYTPFVPYEITLYTSDVFAAG
TDANIFIIIYGCDAVCTQQKYLCTNKREQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNPGWHC
SHVDIRRLLPDKDGAETLTFPCDRWLATSEDDKKTIRELVPYDIFTEKYMKDGSLRQVYKEVEEPLDIVL
YSVQIFTGNIPGAGTDAKVYITIYGDLGDTGERYLGKSENRTNKFERGTADTFIIEAADLGVIYKIKLRH
DNSKWCADWYVEKVEIWNDTNEDEFLFLCGRWLSLKKEDGRLERLFYEKEYTGDRSSNCSSPADFWEIAL
SSKMADVDISTVTGPMADYVQEGPIIPYYVSVTTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKR
GFSRGSVEEFYVAGLDVGIIKKIELGHDGASPESCWLVEELCLAVPTQGTKYMLNCNCWLAKDRGDGITS
RVFDLLDAMVVNIGVKVLYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQLDKKKARFEREQNDTFIM
EILDIAPFTKMRIRIDGLGSRPEWFLERILLKNMNTGDLTMFYYGDWLSQRKGKKTLVCEMCAVIDEEEM
MEWTSYTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANWNKFERNNTDTFNFPDMLSLGHLCK
LRVWHDNKGIFPGWHLSYVDVKDNSRDETFHFQCDCWLSKSEGDGQTVRDFACANNKICDELEETTYEIV
IETGNGGETRENVWLILEGRKNRSKEFLMENSSRQRAFRKGTTDTFEFDSIYLGDIASLCVGHLAREDRF
IPKRELAWHVKTITITEMEYGNVYFFNCDCLIPLKRKRKYFKVFEVTKTTESFASKVQSLVPVKYEVIVT
TGYEPGAGTDANVFVTIFGANGDTGKRELKQKMRNLFERGSTDRFFLETLELVVTRLGLAAECG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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