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Report for CCDS4590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4590.1 Public Homo sapiens 6 H3C4 24 110 108 CCDS HistoryNCBI Gene:8351Re-query CCDS DB by CCDS ID:4590.1Re-query CCDS DB by GeneID:8351See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4590.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356476.3 ENSP00000366999.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356476.3Link to Ensembl Protein Viewer:ENSP00000366999.2Re-query CCDS DB by Nucleotide ID:ENST00000356476Re-query CCDS DB by Protein ID:ENSP00000366999
Original member Current member NCBI NM_001376937.1 NP_001363866.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001376937.1Link to Protein Sequence:NP_001363866.1Re-query CCDS DB by Nucleotide ID:NM_001376937Re-query CCDS DB by Protein ID:NP_001363866Link to BLAST:NP_001363866.1
Original member Current member NCBI NM_003530.4 NP_003521.2 Accepted alive Link to Nucleotide Sequence:NM_003530.4Link to Protein Sequence:NP_003521.2Re-query CCDS DB by Nucleotide ID:NM_003530Re-query CCDS DB by Protein ID:NP_003521Link to BLAST:NP_003521.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363866.1 136 P68431 136 100% 0 0
NP_003521.2 136 P68431 136 100% 0 0

Chromosomal Locations for CCDS 4590.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26196840 26197250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (411 nt):
ATGGCTCGTACCAAGCAGACTGCTCGCAAGTCCACGGGTGGGAAAGCGCCACGCAAGCAGCTGGCCACCA
AGGCTGCTCGAAAGAGCGCTCCAGCCACCGGCGGCGTGAAGAAGCCCCACCGTTACCGGCCCGGCACGGT
GGCTCTGCGCGAGATCCGCCGCTACCAGAAGTCGACCGAGCTGCTGATTCGCAAACTGCCATTCCAGCGT
CTAGTCCGTGAGATCGCGCAGGACTTCAAGACTGATCTGCGTTTTCAGAGCTCGGCGGTGATGGCGCTGC
AGGAGGCCTGCGAGGCCTACCTGGTGGGGCTGTTTGAGGACACCAACCTATGCGCCATTCACGCCAAGCG
AGTGACTATCATGCCCAAGGACATCCAGCTTGCTCGCCGCATTCGTGGGGAGAGGGCGTAA

Translation (136 aa):
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR
LVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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