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Report for CCDS45984.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45984.2 Public Homo sapiens 19 ZNF878 24 110 108 CCDS HistoryNCBI Gene:729747Re-query CCDS DB by CCDS ID:45984.2Re-query CCDS DB by GeneID:729747See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 45984.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45984.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000547628.2 ENSP00000447931.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000547628.2Link to Ensembl Protein Viewer:ENSP00000447931.1Re-query CCDS DB by Nucleotide ID:ENST00000547628Re-query CCDS DB by Protein ID:ENSP00000447931
Original member Current member NCBI NM_001080404.3 NP_001073873.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080404.3Link to Protein Sequence:NP_001073873.2Re-query CCDS DB by Nucleotide ID:NM_001080404Re-query CCDS DB by Protein ID:NP_001073873Link to BLAST:NP_001073873.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073873.2 531 C9JN71 531 100% 0 0

Chromosomal Locations for CCDS 45984.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12043805 12045209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12046368 12046428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12046634 12046760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12052799 12052801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGGATTCGGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATCCTT
CCCAGAAAAATCTCTACAGGGAAGTGATGCAGGAAACCTTGAGGAACCTGACCTCCATAGGAAAAAAATG
GAACAACCAGTACATTGAAGATGAGCACCAAAATCCTAGGAGAAACCTAAGAAGACTTATAGGGGAGAGA
CTCTCTGAAAGTAAAGAAAGTCATCAGCATGGAGAAGTTTTGACACAGGTTCCAGATGACACACTGAAGA
AGAAAACTCCTGGAGTACAATCATATGAAAGCAGTGTGTGTGGAGAAATCGGCATAGGTCTTTCATCCCT
TAATAGGCACCTCAGAGCCTTTAGTTATTCCAGTAGCCTTGCAATACATGGAAGAACTCACACTGGGGAA
AAGCCTTATGAATGTAAGGAATGTGGGAAAGCATTCAGGTTTCCCAGTTCTGTTCGTAGACATGAAAGAA
TCCACTCTGCAAAAAAACCCTATGAATGTAAGCAGTGTGGGAAAGCATTCAGTTTTCCCAGTTCTGTTCG
TAGACATGAAAGAATCCACTCTGCAAAAAAACCCTATGAATGTAAGCAGTGTGGGAAAGCATTATCTTAT
CTTGTAAGCTTTCAGACACACATGAGAATGCACACTGGAGAGAGACCTCATAAATGTAACATATGTGGGA
AAGCCTTTTTTTCTCCCAGTTCGTTAAAAAGACACGAGAAAAGTCACACTGGAGAGAAACGCTATAAATG
CAAGCAATGTGATAAAGCCTTCAATTGTCCCAGTTCCTTTCAATATCATGAAAGGACTCACAGTGGAGAG
AAACCCTATGAGTGTACACAATGTAGGAAAGCCTTCAGATCTGTCAAGTACCTGCGAGTACATGAAAGAA
AACACACTGGAGAGAAACCCTATGAGTGTAAGCTATGTGGTAAGGGATTTATTTCTTCCACTTCCTTTCG
CTATCATGAAAAGACTCACACTGGAGAGAAACCTTATGAATGTAAAAAATGTGTGAAAGCCTTCAGTTTT
GTCAAGGATCTTCGAATACATGAAAGGACACACACTGGAGAGAAACCCTTTGAATGTAAACAATGTGGGA
AAACCTTCACTTCTTCCAATTCCTTTCACTATCATGAAAGGACTCACACTGGAGAGAAACCCTATGAGTG
TAAGCAATGTGGGAAAGCCTTCAGATCTGCCTCAGTCCTTCAAAAGCACATACGAACTCACACAGGAGAG
AAACCCTATGGATGTAAGCAATGTGGTAAAGTCTTTAGAGTTGCCTCACAACTTAAAATGCATGAAAGGA
CTCACACAGGAGAGAAACCCTATGAGTGTAAGCAATGTGGAAAAGCCTTCATTTCTTCTAATTCTATTCG
CTATCATAAAAGGACTCACACTGGAGAGAAACCCTATAAATGTAAACAGTGTGGGAAAGCCTTCATTTCT
TCCAACTCTTTTCTCTACCATGAAAGGATTCATACTGGAGAGAAACCCTATGAGTGTAAGCAATGTGGTA
AAGCCTTTAGATCTGCCTCAATCCTTCAAAAGCATGTAAGGACTCACGCTGGCTAG

Translation (531 aa):
MDSVAFEDVAVNFTQEEWALLDPSQKNLYREVMQETLRNLTSIGKKWNNQYIEDEHQNPRRNLRRLIGER
LSESKESHQHGEVLTQVPDDTLKKKTPGVQSYESSVCGEIGIGLSSLNRHLRAFSYSSSLAIHGRTHTGE
KPYECKECGKAFRFPSSVRRHERIHSAKKPYECKQCGKAFSFPSSVRRHERIHSAKKPYECKQCGKALSY
LVSFQTHMRMHTGERPHKCNICGKAFFSPSSLKRHEKSHTGEKRYKCKQCDKAFNCPSSFQYHERTHSGE
KPYECTQCRKAFRSVKYLRVHERKHTGEKPYECKLCGKGFISSTSFRYHEKTHTGEKPYECKKCVKAFSF
VKDLRIHERTHTGEKPFECKQCGKTFTSSNSFHYHERTHTGEKPYECKQCGKAFRSASVLQKHIRTHTGE
KPYGCKQCGKVFRVASQLKMHERTHTGEKPYECKQCGKAFISSNSIRYHKRTHTGEKPYKCKQCGKAFIS
SNSFLYHERIHTGEKPYECKQCGKAFRSASILQKHVRTHAG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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