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Report for CCDS461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
461.1 Public Homo sapiens 1 SCMH1 24 110 108 CCDS HistoryNCBI Gene:22955Re-query CCDS DB by CCDS ID:461.1Re-query CCDS DB by GeneID:22955See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 461.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372597.5 ENSP00000361678.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372597.5Link to Ensembl Protein Viewer:ENSP00000361678.1Re-query CCDS DB by Nucleotide ID:ENST00000372597Re-query CCDS DB by Protein ID:ENSP00000361678
Original member Current member NCBI NM_012236.4 NP_036368.1 Accepted alive Link to Nucleotide Sequence:NM_012236.4Link to Protein Sequence:NP_036368.1Re-query CCDS DB by Nucleotide ID:NM_012236Re-query CCDS DB by Protein ID:NP_036368Link to BLAST:NP_036368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036368.1 591 Q96GD3-4 591 100% 0 0

Chromosomal Locations for CCDS 461.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 41028194 41028319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41028584 41028726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41037362 41037541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41046407 41046598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41048690 41048890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41070595 41070721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41075219 41075451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41113283 41113526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41116922 41117010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41142878 41143112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41159725 41159730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGCAGTCCTACACACCTCCAAGCAACGAGTTCAAGATCAGTATGAAATTGGAAGCACAGGACCCCAGGA
AC
ACCACATCCACCTGTATTGCCACAGTAGTTGGACTGACAGGTGCCCGCCTTCGCCTGCGCCTTGATGG
G
AGCGACAACAAAAATGACTTCTGGCGGCTGGTTGACTCAGCTGAAATCCAGCCTATTGGGAACTGTGAA
AAG
AATGGGGGTATGCTACAGCCACCTCTTGGATTTCGGCTGAATGCGTCTTCTTGGCCCATGTTCCTTT
TG
AAGACGCTAAATGGAGCAGAGATGGCTCCCATCAGGATTTTCCACAAGGAGCCACCATCGCCTTCCCA
C
AACTTCTTCAAAATGGGAATGAAGCTAGAAGCTGTGGACAGGAAGAACCCTCATTTCATTTGCCCAGCC
ACT
ATTGGGGAGGTTCGGGGCTCAGAGGTGCTTGTCACTTTTGATGGGTGGCGAGGGGCCTTTGACTACT
GG
TGCCGCTTCGACTCCCGAGACATCTTCCCTGTGGGCTGGTGTTCCTTGACTGGAGACAACCTGCAGCC
T
CCTGGCACCAAAGTTGTGATTCCAAAGAATCCCTATCCTGCCTCCGATGTGAATACTGAGAAGCCCAGC
ATC
CACAGCAGCACCAAAACTGTCTTGGAACATCAACCAGGGCAGAGGGGGCGTAAACCAGGAAAGAAGC
GG
GGCCGGACACCCAAGACCCTAATTTCCCATCCCATCTCTGCCCCATCCAAGACAGCTGAACCTTTGAA
A
TTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGAGGAAACCTCGGACTTTGCTGAACCCACCACCT
GCC
TCACCAACAACCAGCACTCCTGAACCGGATACCAGCACTGTACCCCAGGATGCTGCCACCATCCCCA
GC
TCAGCCATGCAGGCCCCAACAGTTTGTATCTACTTGAACAAGAATGGCAGCACAGGCCCCCACTTAGA
T
AAGAAGAAGGTCCAGCAACTCCCTGACCATTTTGGACCAGCCCGTGCCTCTGTGGTGTTGCAGCAGGCT
GTC
CAGGCCTGTATCGACTGTGCTTATCACCAGAAAACCGTCTTCAGCTTCCTCAAGCAAGGCCATGGTG
GT
GAGGTTATCTCAGCCGTGTTTGACCGGGAACAGCATACCCTCAACCTCCCAGCAGTCAACAGCATCAC
C
TACGTCCTCCGCTTCCTGGAGAAACTCTGCCACAACCTTCGTAGTGACAATCTGTTTGGCAACCAGCCC
TTT
ACACAGACTCACTTGTCACTCACTGCCATAGAGTACAGCCACAGCCACGACAGGTACCTACCAGGTG
AA
ACCTTTGTCCTGGGGAATAGTCTGGCCCGCTCCTTGGAACCACACTCAGACTCAATGGACTCTGCCTC
A
AATCCCACCAACCTTGTCAGCACCTCCCAAAGGCACCGGCCCTTGCTTTCATCCTGTGGCCTCCCACCA
AGC
ACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGGTCGGACCGATACCTGGAGAGCCGCGATGCCT
CT
CGACTGAGTGGCCGGGACCCCTCCTCATGGACAGTCGAGGATGTGATGCAGTTTGTCCGGGAAGCTGA
T
CCTCAGCTTGGACCCCACGCTGACCTGTTTCGCAAACACGAGATCGATGGCAAGGCCCTGCTGCTGCTG
CGC
AGTGACATGATGATGAAGTACATGGGCCTGAAGCTGGGGCCTGCACTCAAGCTCTCCTACCACATTG
AC
CGGCTGAAGCAGGGCAAGTTCTGA


Translation (591 aa):
MQSYTPPSNEFKISMKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCE
K
NGGMLQPPL
GFRLNASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPA
T
IGEVRGSEVLVTFDGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTK
VVIPKNPYPASDVNTEKPS
I
HSSTKTVLEHQPGQRGRKPGKKRGRTPKTLISHPISAPSKTAEPLKFPKKRGPKPGSK
RKPRTLLNPPP
A
SPTTSTPEPDTSTVPQDAATIPSSAMQAPT
VCIYLNKNGSTGPHLDKKKVQQLPDHFGPARASVVLQQA
V
QACIDCAYHQKTVFSFLKQGHGGEVIS
AVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQP
F
TQTHLSLTAIEYSHSHDRYLP
GETFVLGNSLARSLEPHSDSMDSASNPTNLVSTSQRHRPLLSSCGLPP
S
TASAVRRLCSR
GSDRYLESRDASRLSGRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLL
R
SDMMMKYMGLKLGPALKLSYHIDRLKQGKF




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser