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Report for CCDS46120.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46120.2 Public Homo sapiens 19 CCDC61 24 110 108 CCDS HistoryNCBI Gene:729440Re-query CCDS DB by CCDS ID:46120.2Re-query CCDS DB by GeneID:729440See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 46120.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46120.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000595358.5 ENSP00000471454.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000595358.5Link to Ensembl Protein Viewer:ENSP00000471454.1Re-query CCDS DB by Nucleotide ID:ENST00000595358Re-query CCDS DB by Protein ID:ENSP00000471454
Original member Current member NCBI NM_001267723.2 NP_001254652.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001267723.2Link to Protein Sequence:NP_001254652.1Re-query CCDS DB by Nucleotide ID:NM_001267723Re-query CCDS DB by Protein ID:NP_001254652Link to BLAST:NP_001254652.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254652.1 512 Q9Y6R9-1 512 100% 0 0

Chromosomal Locations for CCDS 46120.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46003019 46003166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46003419 46003501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46006559 46006716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46008140 46008301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46015049 46015259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46015345 46015427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46016054 46016223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46016318 46016393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46016694 46016833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46016991 46017069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46017247 46017304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46018078 46018150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46018290 46018387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGACCAGCCGGCTGGCCTGCAGGTGGACTACGTCTTCCGGGGTGTGGAGCATGCCGTGCGGGTGATGG
TTTCTGGGCAGGTGCTGGAGCTGGAGGTGGAGGACCGGATGACGGCTGACCAGTGGCGGGGCGAGTTCGA
TGCTGGCTTCATTGAAGATTTGACTCACAAGACAGGGAACTTCAAACAGTTCAACATCTTCTGTCATATG
CTGGAGTCAGCCCTCACTCAGAGTAGTGAGTCAGTCACCCTGGACCTGCTGACCTACACAGACCTGGAGT
CCCTGCGGAACCGCAAGATGGGGGGCCGCCCAGGCTCCTTGGCCCCCAGGTCGGCCCAGCTCAACTCCAA
GCGCTACCTGATCCTCATCTACTCCGTGGAGTTTGACAGGATTCACTACCCGCTGCCCCTCCCGTACCAG
GGCAAGCCAGACCCCGTGGTTCTGCAGGGCATCATCCGGTCACTGAAGGAGGAACTGGGCCGCCTGCAAG
GGCTGGATGGCCAGAACACTCGGGACACCCGGGAGAATGAGATCTGGCATCTGCGGGAGCAGGTGTCGCG
CCTGGCGTCCGAGAAGCGGGAGCTGGAGGCGCAGCTGGGCCGATCGCGCGAGGAGGCGCTGGCCGGGCGC
GCGGCACGCCAGGAGGCCGAGGCGCTGCGCGGGCTGGTGCGCGGGCTGGAGCTGGAGCTGCGGCAGGAGC
GCGGCCTCGGGCACAGGGTGGCCGGCCGTCGCGGCCAGGACTGCCGCCGTCTGGCCAAGGAGCTCGAGGA
GGCGAAGGCATCGGAGCGGAGCCTGCGCGCCCGGCTGAAGACGCTGACCAGCGAGCTGGCATTGTACAAG
AGGGGGAGGCGGACTCCGCCGGTGCAGCCGCCCCCGACGCGGGAGGACCGGGCCTCATCGTCCCGGGAGC
GCTCCGCGTCGCGAGGCCGCGGCGCCGCGCGCTCCTCATCCCGGGAGAGCGGCCGCGGGAGCCGGGGTCG
GGGCCGCCCTGCGCGCCCCTCGCCCTCGCCCACAGGTGGTCGCGCGCTCCGCTTCGACCCCACGGCCTTT
GTGAAAGCCAAGGAAAGGAAGCAGAGAGAGATCCAGATGAAGCAGCAGCAGCGGAACCGCTTAGGCAGTG
GGGGAAGCGGGGACGGTCCGTCCGTCTCCTGGTCTCGCCAGACCCAGCCCCCTGCTGCCTTGACTGGCCG
AGGGGACGCCCCTAACCGCTCCCGAAACCGCAGCTCCTCAGTGGACAGTTTCCGCAGCCGCTGCTCGTCT
GCCAGCTCCTGCAGCGATTTGGAGGATTTCTCTGAGTCGCTCTCCAGAGGGGGTCACCGCCGCCGTGGGA
AGCCTCCCAGCCCAACGCCCTGGAGTGGGTCCAATATGAAGTCTCCCCCCGTGGAACGCAGCCACCATCA
GAAATCTCTGGCCAACTCCGGGGGCTGGGTCCCCATCAAAGAGTACAGCTCGGAGCACCAGGCGGCTGAC
ATGGCCGAAATAGACGCACGCCTGAAGGCCTTGCAGGAGTACATGAACCGACTGGACATGCGGTCATAA

Translation (512 aa):
MDQPAGLQVDYVFRGVEHAVRVMVSGQVLELEVEDRMTADQWRGEFDAGFIEDLTHKTGNFKQFNIFCHM
LESALTQSSESVTLDLLTYTDLESLRNRKMGGRPGSLAPRSAQLNSKRYLILIYSVEFDRIHYPLPLPYQ
GKPDPVVLQGIIRSLKEELGRLQGLDGQNTRDTRENEIWHLREQVSRLASEKRELEAQLGRSREEALAGR
AARQEAEALRGLVRGLELELRQERGLGHRVAGRRGQDCRRLAKELEEAKASERSLRARLKTLTSELALYK
RGRRTPPVQPPPTREDRASSSRERSASRGRGAARSSSRESGRGSRGRGRPARPSPSPTGGRALRFDPTAF
VKAKERKQREIQMKQQQRNRLGSGGSGDGPSVSWSRQTQPPAALTGRGDAPNRSRNRSSSVDSFRSRCSS
ASSCSDLEDFSESLSRGGHRRRGKPPSPTPWSGSNMKSPPVERSHHQKSLANSGGWVPIKEYSSEHQAAD
MAEIDARLKALQEYMNRLDMRS


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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