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Report for CCDS4618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4618.1 Public Homo sapiens 6 H2BC11 24 110 108 CCDS HistoryNCBI Gene:8970Re-query CCDS DB by CCDS ID:4618.1Re-query CCDS DB by GeneID:8970See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4618.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339812.3 ENSP00000342886.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339812.3Link to Ensembl Protein Viewer:ENSP00000342886.3Re-query CCDS DB by Nucleotide ID:ENST00000339812Re-query CCDS DB by Protein ID:ENSP00000342886
Original member Current member EBI ENST00000607124.1 ENSP00000476136.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000607124.1Link to Ensembl Protein Viewer:ENSP00000476136.1Re-query CCDS DB by Nucleotide ID:ENST00000607124Re-query CCDS DB by Protein ID:ENSP00000476136
Original member Current member NCBI NM_021058.4 NP_066402.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021058.4Link to Protein Sequence:NP_066402.2Re-query CCDS DB by Nucleotide ID:NM_021058Re-query CCDS DB by Protein ID:NP_066402Link to BLAST:NP_066402.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066402.2 126 P06899 126 100% 0 0

Chromosomal Locations for CCDS 4618.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 27132370 27132750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCCAGAGCCAGCGAAGTCTGCTCCCGCCCCGAAAAAGGGCTCCAAGAAGGCGGTGACTAAGGCGCAGA
AGAAAGACGGCAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTATTCCATCTATGTGTACAAGGTTCTGAA
GCAGGTCCACCCTGACACCGGCATTTCGTCCAAGGCCATGGGCATCATGAATTCGTTTGTGAACGACATT
TTCGAGCGCATCGCAGGTGAGGCTTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGG
AGATCCAGACGGCCGTGCGCCTGCTGCTGCCTGGGGAGTTGGCCAAGCACGCCGTGTCCGAGGGTACTAA
GGCCGTCACCAAGTACACCAGCGCTAAGTAA

Translation (126 aa):
MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDI
FERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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