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Report for CCDS46209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46209.1 Public Homo sapiens 19 ZNF548 24 110 108 CCDS HistoryNCBI Gene:147694Re-query CCDS DB by CCDS ID:46209.1Re-query CCDS DB by GeneID:147694See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46209.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366197.9 ENSP00000379482.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366197.9Link to Ensembl Protein Viewer:ENSP00000379482.3Re-query CCDS DB by Nucleotide ID:ENST00000366197Re-query CCDS DB by Protein ID:ENSP00000379482
Original member Current member NCBI NM_152909.4 NP_690873.2 Accepted alive Link to Nucleotide Sequence:NM_152909.4Link to Protein Sequence:NP_690873.2Re-query CCDS DB by Nucleotide ID:NM_152909Re-query CCDS DB by Protein ID:NP_690873Link to BLAST:NP_690873.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690873.2 533 Q8NEK5-1 533 100% 0 0

Chromosomal Locations for CCDS 46209.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57390100 57390114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57397048 57397174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57398430 57399889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGAACCTGACTGAGGGCCGTGTGGTCTTTGAGGACGTGGCCATATATTTCTCCCAGGAGGAGTGGGGGC
ACCTTGATGAGGCTCAGAGATTGCTGTACCGTGATGTGATGCTGGAGAATTTGGCCCTTTTGTCCTCACT
AGGTTCTTGGCATGGAGCTGAGGATGAGGAGGCACCTTCACAGCAAGGTTTTTCTGTAGGAGTGTCAGAG
GTTACAGCTTCAAAGCCCTGTCTGTCCAGCCAGAAGGTCCACCCTAGTGAGACATGTGGCCCACCCTTGA
AAGACATTCTGTGCCTGGTTGAGCACAATGGAATTCATCCTGAGCAACACATATATATTTGTGAGGCAGA
GCTTTTTCAGCACCCAAAGCAGCAAATTGGAGAAAATCTTTCCAGAGGGGATGATTGGATACCTTCATTT
GGGAAGAACCACAGAGTTCACATGGCAGAGGAGATCTTCACATGCATGGAGGGCTGGAAGGACTTACCAG
CCACCTCATGCCTTCTCCAGCACCAGGGCCCTCAAAGCGAGTGGAAGCCATACAGGGACACAGAGGACAG
AGAAGCCTTTCAGACTGGACAAAATGATTACAAATGTAGTGAATGTGGGAAAACCTTCACCTGCAGCTAT
TCATTTGTTGAGCACCAGAAAATCCACACAGGAGAAAGGTCTTATGAATGTAACAAATGTGGGAAATTCT
TTAAGTACAGTGCCAATTTCATGAAACATCAGACAGTTCACACTAGTGAAAGGACTTATGAGTGCAGAGA
ATGTGGAAAATCCTTTATGTACAACTACCGACTCATGAGACATAAGCGAGTTCACACTGGAGAAAGGCCT
TATGAGTGCAACACATGTGGGAAATTCTTTCGGTACAGCTCCACATTTGTTAGACATCAGAGAGTTCACA
CCGGAGAAAGGCCGTATGAGTGCAGGGAATGTGGGAAATTCTTTATGGACAGCTCCACACTCATTAAACA
TCAGAGAGTTCACACCGGAGAAAGACCTTATAAGTGCAATGATTGTGGGAAATTTTTTAGGTATATCTCC
ACACTCATTAGACATCAGAGAATTCACACTGGAGAAAGGCCTTATGAGTGCAGTGTATGTGGGGAATTGT
TTAGGTACAACTCCAGCCTTGTTAAACATTGGAGAAATCACACTGGAGAAAGGCCTTATAAATGCAGTGA
ATGTGGGAAATCATTTAGGTACCACTGCAGGCTCATTAGACACCAGAGAGTCCACACGGGAGAAAGGCCT
TATGAGTGCAGCGAATGCGGGAAATTCTTTCGTTACAACTCCAACCTCATTAAACATTGGAGAAATCACA
CTGGAGAAAGGCCTTACGAGTGCAGAGAGTGTGGGAAAGCCTTTAGCCACAAGCATATACTTGTTGAGCA
CCAGAAAATCCACAGTGGAGAAAGACCTTATGAGTGCAGCGAATGCCAGAAGGCCTTTATTAGAAAGTCT
CACCTGGTTCATCACCAGAAAATCCACAGTGAAGAGAGGCTTGTGTGCTCCATGAATGTGGGGAATTCTT
TAGCTAAAACTCCAACCTCATTAAACATCAGAGATTTCACAATGGAGAAAGTTTACCATTGA

Translation (533 aa):
MNLTEGRVVFEDVAIYFSQEEWGHLDEAQRLLYRDVMLENLALLSSLGSWHGAEDEEAPSQQGFSVGVSE
VTASKPCLSSQKVHPSETCGPPLKDILCLVEHNGIHPEQHIYICEAELFQHPKQQIGENLSRGDDWIPSF
GKNHRVHMAEEIFTCMEGWKDLPATSCLLQHQGPQSEWKPYRDTEDREAFQTGQNDYKCSECGKTFTCSY
SFVEHQKIHTGERSYECNKCGKFFKYSANFMKHQTVHTSERTYECRECGKSFMYNYRLMRHKRVHTGERP
YECNTCGKFFRYSSTFVRHQRVHTGERPYECRECGKFFMDSSTLIKHQRVHTGERPYKCNDCGKFFRYIS
TLIRHQRIHTGERPYECSVCGELFRYNSSLVKHWRNHTGERPYKCSECGKSFRYHCRLIRHQRVHTGERP
YECSECGKFFRYNSNLIKHWRNHTGERPYECRECGKAFSHKHILVEHQKIHSGERPYECSECQKAFIRKS
HLVHHQKIHSEERLVCSMNVGNSLAKTPTSLNIRDFTMEKVYH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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