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Report for CCDS46218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46218.1 Public Homo sapiens 2 ALKAL2 24 110 108 CCDS HistoryNCBI Gene:285016Re-query CCDS DB by CCDS ID:46218.1Re-query CCDS DB by GeneID:285016See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46218.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403610.9 ENSP00000384604.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000403610.9Link to Ensembl Protein Viewer:ENSP00000384604.3Re-query CCDS DB by Nucleotide ID:ENST00000403610Re-query CCDS DB by Protein ID:ENSP00000384604
Original member Current member NCBI NM_001002919.3 NP_001002919.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001002919.3Link to Protein Sequence:NP_001002919.2Re-query CCDS DB by Nucleotide ID:NM_001002919Re-query CCDS DB by Protein ID:NP_001002919Link to BLAST:NP_001002919.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001002919.2 152 Q6UX46-1 152 100% 0 0

Chromosomal Locations for CCDS 46218.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 280147 280152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 283111 283175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 286123 286203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 286290 286343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 287583 287835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (459 nt):
ATGCGCGGACCCGGGCACCCCCTCCTCCTGGGGCTGCTGCTGGTGCTGGGGGCGGCGGGGCGCGGCCGGG
GGGGCGCGGAGCCCCGGGAGCCGGCGGACGGACAGGCGCTGCTGCGGCTGGTGGTGGAACTCGTCCAGGA
GCTGCGGAAGCACCACTCGGCGGAGCACAAGGGCCTGCAGCTCCTCGGGCGGGACTGCGCCCTGGGCCGC
GCGGAGGCGGCGGGGCTGGGGCCTTCGCCGGAGCAGCGAGTGGAAATTGTTCCTCGAGATCTGAGGATGA
AGGACAAGTTTCTAAAACACCTTACAGGCCCTCTTTATTTTAGTCCAAAGTGCAGCAAACACTTCCATAG
ACTTTATCACAACACCAGAGACTGCACCATTCCTGCATACTATAAAAGATGCGCCAGGCTTCTTACCCGG
CTGGCTGTCAGTCCAGTGTGCATGGAGGATAAGCAGTGA

Translation (152 aa):
MRGPGHPLLLGLLLVLGAAGRGRGGAEPREPADGQALLRLVVELVQELRKHHSAEHKGLQLLGRDCALGR
AEAAGLGPSPEQRVEIVPRDLRMKDKFLKHLTGPLYFSPKCSKHFHRLYHNTRDCTIPAYYKRCARLLTR
LAVSPVCMEDKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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