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Report for CCDS46227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46227.1 Public Homo sapiens 2 ATAD2B 24 110 108 CCDS HistoryNCBI Gene:54454Re-query CCDS DB by CCDS ID:46227.1Re-query CCDS DB by GeneID:54454See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 46227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238789.10 ENSP00000238789.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238789.10Link to Ensembl Protein Viewer:ENSP00000238789.5Re-query CCDS DB by Nucleotide ID:ENST00000238789Re-query CCDS DB by Protein ID:ENSP00000238789
Original member Current member NCBI NM_017552.4 NP_060022.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017552.4Link to Protein Sequence:NP_060022.2Re-query CCDS DB by Nucleotide ID:NM_017552Re-query CCDS DB by Protein ID:NP_060022Link to BLAST:NP_060022.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060022.2 1458 Q9ULI0-1 1458 100% 0 0

Chromosomal Locations for CCDS 46227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 23752046 23752087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23754179 23754307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23754647 23754774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23757418 23758101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23762209 23762346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23765506 23765628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23782869 23783028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23786027 23786223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23788512 23788647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23798138 23798323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23810316 23810502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23819747 23819882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23823258 23823569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23828849 23828939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23833919 23834078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23857415 23857503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23863381 23863555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23864809 23864924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23867835 23867946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23869663 23869761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23875829 23875904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23880639 23880755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23884765 23884873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23885727 23885829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23887832 23887985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23888350 23888399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23895819 23895970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23926555 23926770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4377 nt):
ATGGTGAACACCCGGAAGAGCTCTCTCCGCCTTCTCGGGTCCAAGTCTCCTGGTCCCGGGCCTGGGCCTG
GGGCCGGAGCAGAGCCTGGGGCGACCGGAGGCAGCAGCCATTTCATCTCCTCTCGGACCCGCTCCTCCAA
GACCCGCGCCGCCAGCTGCCCCGCCGCCAAAGCCGGGGGAAGCGGTGGCGCCGGCGTCACTCTGGATGAG
GCCAGGAAAGTTGAAGTTGATGGTAGTTTAAGTGATAGCCACGTATCTCCTCCAGCCAAACGCACTTTGA
AACAACCTGATTCTGTTTGCAAAGACAAATCAAAATCACGAAGTACTGGTCAGCGAGAGGAATGGAACTT
ATCAACTGGACAGGCCAGGTTAACTTCTCAGCCTGGTGCTACATTACCAAATGGACATAGTGGCTTATCC
CTTCGAAGCCATCCCCTTCGAGGGGAAAAGAAGGGAGATGGGGACCTTTCTTGTATAAATGGTGACATGG
AAGTCAGAAAAAGTTGTCGTTCCAGGAAAAACAGATTTGAAAGTGTGAACCAGAGTTTGTTATTTGATCA
ACTAGTAAATAGCACTGCTGAAGCTGTACTACAGGAAATGGACAACATTAACATCCGACGGAATCGTCGA
TCAGGAGAAGTAGAACGACTTCGAATGTGGACAGATACAGAATTTGAAAACATGGATATGTATTCAAGAG
TGAAAAGGCGAAGAAAGTCACTAAGAAGAAATAGTTATGGGATACAAAATCATCATGAAGTTTCTACTGA
GGGTGAAGAAGAAGAATCTCAAGAGGAGGATGGAGATATAGAAGTTGAAGAGGCAGAAGGAGAAGAAAAT
GATAGACCATATAATTTGAGACAGAGAAAAACAGTGGATCGATACCAAGCACCTCCAATAGTACCAGCTC
ATCAAAAAAAGAGGGAAAACACGCTGTTTGATATTCATAGATCTCCAGCAAGAAGAAGCCATATTAGGAG
AAAGAAGCATGCCATTCATAGTAGTGACACAACTTCTTCTGATGAGGAACGCTTTGAAAGAAGGAAATCA
AAGAGCATGGCAAGAGCAAGAAATAGATGTTTGCCTATGAACTTCAGAGCAGAGGACTTAGCTAGCGGTA
TTCTCCGAGAACGAGTGAAAGTGGGTGCAAGCTTGGCTGATGTTGATCCAATGAACATTGATAAATCAGT
ACGGTTTGATAGCATAGGTGGATTGAGCCATCATATTCATGCGCTAAAGGAAATGGTAGTATTCCCACTT
TTATATCCAGAAATTTTTGAAAAGTTTAAAATTCAGCCTCCAAGGGGCTGTTTGTTTTATGGCCCTCCTG
GCACAGGTAAAACCTTGGTTGCCAGAGCATTAGCTAATGAATGCAGCCAAGGAGACAAAAAAGTGGCTTT
TTTTATGCGAAAAGGAGCAGATTGTTTGAGCAAGTGGGTTGGTGAATCTGAAAGGCAACTTAGGCTTCTT
TTTGATCAGGCATATTTGATGAGACCTTCTATAATATTTTTTGATGAAATAGATGGATTAGCTCCAGTTC
GCTCTAGCAGACAAGATCAGATCCACAGCTCTATAGTATCAACCCTCCTTGCTCTTATGGATGGATTAGA
TAATAGGGGTGAAATTGTTGTTATTGGTGCTACAAACAGACTTGACTCTATAGATCCTGCACTCAGGAGA
CCTGGTCGTTTTGACAGAGAATTCCTCTTCAACCTGCCTGATCAAAAGGCAAGAAAACACATCTTACAGA
TCCATACCAGGGACTGGAATCCAAAATTGTCAGATGCATTTTTAGGTGAATTGGCTGAAAAATGTGTTGG
CTACTGTGGAGCCGATATCAAGGCCCTGTGCACTGAAGCCGCCCTGATTGCACTGCGGAGGCGTTATCCC
CAGATCTATGCTAGCAGTCATAAACTGCAGCTGGATGTTTCCTCAATAGTGCTTAGTGCCCAAGATTTTT
ACCATGCAATGCAGAATATCGTGCCTGCTTCCCAACGTGCTGTGATGTCTTCAGGGCATGCACTATCCCC
CATCATAAGACCACTGCTGGAAAGAAGCTTCAACAACATCCTAGCAGTCTTGCAAAAAGTGTTTCCTCAT
GCTGAAATTAGCCAGAGTGACAAAAAAGAAGATATAGAAACTTTAATTTTAGAGGATAGTGAAGATGAAA
ATGCTTTATCAATTTTTGAGACCAATTGTCACTCAGGATCACCAAAGAAACAGTCATCATCTGCTGCTAT
ACATAAACCCTACCTTCATTTTACAATGTCACCATATCATCAGCCAACCTCTTACAGGCCACGCTTATTG
CTCTCTGGAGAACGGGGCTCAGGTCAAACTTCTCACCTTGCTCCAGCACTTTTGCACACTCTAGAAAGAT
TCTCTGTGCATAGACTAGATCTCCCAGCACTTTATTCAGTTAGTGCCAAAACACCTGAGGAATCATGTGC
ACAGATTTTTCGTGAAGCTCGAAGAACAGTACCTAGTATTGTTTACATGCCTCACATTGGGGATTGGTGG
GAAGCTGTCAGTGAAACTGTGAGAGCAACTTTTCTGACATTGCTACAAGATATACCATCATTTTCACCTA
TATTTTTATTGTCTACCTCTGAAACCATGTACAGTGAACTGCCTGAAGAGGTTAAATGTATCTTTAGAAT
ACAGTATGAAGAGGTCTTGTATATTCAAAGGCCTATTGAAGAAGACAGAAGAAAATTTTTTCAAGAATTG
ATTCTCAATCAGGCATCAATGGCTCCACCACGAAGGAAACATGCTGCTCTTTGTGCTATGGAAGTGCTTC
CTCTTGCACTACCTTCTCCACCTCGTCAATTATCAGAATCAGAAAAAAGTCGAATGGAGGACCAGGAGGA
AAATACTTTAAGAGAGTTGCGGTTGTTTCTCAGGGATGTAACCAAGAGGCTGGCCACAGATAAACGCTTT
AACATCTTCAGCAAACCGGTGGATATTGAAGAGGTTTCAGATTATCTTGAAGTAATCAAGGAACCAATGG
ACTTATCAACAGTAATAACTAAAATTGATAAACATAATTACCTGACTGCAAAGGATTTCCTGAAAGATAT
TGACCTCATCTGTAGCAATGCTTTAGAGTATAATCCAGATAAGGACCCAGGAGATAAAATAATTAGGCAC
AGGGCTTGTACCCTGAAGGACACTGCACATGCTATCATTGCAGCTGAATTAGATCCAGAATTTAATAAAC
TTTGTGAGGAAATTAAGGAAGCAAGAATAAAAAGAGGCTTATCAGTAACATCAGAACAAATAAATCCTCA
TAGTACTGGAGCTCGGAAGACAGAAACTAGAGTCGAAGAGGCATTTCGGCACAAACAAAGAAATCCAATG
GATGTGTGGCACAACTCTGCAAATAAATGTGCATTTCGGGTTCGGAGAAAATCAAGGCGGAGATCACAGT
GGGGTAAAGGAATTATTAAGAAAAGGAAAGTTAATAATTTAAAAAAAGATGAAGAAGACACCAAATTTGC
AGACTATGAGAACCATACGGAGGACAGGAAATTATTAGAGAATGGAGAGTTTGAGGTAAGCACTGACTGC
CATGAGGAAAATGGAGAAGAGACTGGAGACTTATCTATGACCAATGATGAATCATCCTGTGACATCATGG
ACTTGGACCAGGGGCAGAGGCTTAACAATGGAGCAGGCACAAAAGAGAACTTTGCATCTACTGAGGAGGA
AAGTTCAAATGAATCTCTACTGGTCAACAGCAGCAGTTCCTTAAACCCGGAGCAGACCTCCAGGAAAGAG
ACTTTCCTTAAAGGAAATTGTCTAAATGGTGAGGCTTCCACTGACAGTTTTGAAGGAATACCAGTTCTGG
AATGTCAGAATGGCAAGCTTGAAGTAGTTTCTTTCTGTGATAGTGGAGATAAATGTAGTTCTGAACAAAA
GATTCTTCTGGAGGACCAGTCAAAAGAAAAACCAGAAACTTCGACTGAAAATCATGGAGATGATCTTGAG
AAACTAGAGGCACTGGAATGTAGCAATAATGAGAAGTTAGAACCTGGCTCTGATGTGGAGGTTAAAGATG
CAGAACTGGATAAAGAAGGTGCTTCTAAAGTAAAGAAATACCGTAAATTAATTTTAGAGCAGGCAAAAAC
GACAAGCCTGGAACTGGTTCCAGAAGAGCCATCTGAGCCTGTGCCTCCTCTTATAGTTGATCGTGAGAGA
TTGAAGAAATTGCTTGATTTGTTGGTGGATAAAAGCAACAATCTGGCAGTTGATCAGCTTGAGAGATTAT
ATTCTCTTCTTAGTCAGTGTATCTACCGTCATCGTAAAGATTATGACAAATCACAACTTGTAGAGGAGAT
GGAAAGAACAGTTCATATGTTTGAGACATTCCTATGA

Translation (1458 aa):
MVNTRKSSLRLLGSKSPGPGPGPGAGAEPGATGGSSHFISSRTRSSKTRAASCPAAKAGGSGGAGVTLDE
ARKVEVDGSLSDSHVSPPAKRTLKQPDSVCKDKSKSRSTGQREEWNLSTGQARLTSQPGATLPNGHSGLS
LRSHPLRGEKKGDGDLSCINGDMEVRKSCRSRKNRFESVNQSLLFDQLVNSTAEAVLQEMDNINIRRNRR
SGEVERLRMWTDTEFENMDMYSRVKRRRKSLRRNSYGIQNHHEVSTEGEEEESQEEDGDIEVEEAEGEEN
DRPYNLRQRKTVDRYQAPPIVPAHQKKRENTLFDIHRSPARRSHIRRKKHAIHSSDTTSSDEERFERRKS
KSMARARNRCLPMNFRAEDLASGILRERVKVGASLADVDPMNIDKSVRFDSIGGLSHHIHALKEMVVFPL
LYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALANECSQGDKKVAFFMRKGADCLSKWVGESERQLRLL
FDQAYLMRPSIIFFDEIDGLAPVRSSRQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRR
PGRFDREFLFNLPDQKARKHILQIHTRDWNPKLSDAFLGELAEKCVGYCGADIKALCTEAALIALRRRYP
QIYASSHKLQLDVSSIVLSAQDFYHAMQNIVPASQRAVMSSGHALSPIIRPLLERSFNNILAVLQKVFPH
AEISQSDKKEDIETLILEDSEDENALSIFETNCHSGSPKKQSSSAAIHKPYLHFTMSPYHQPTSYRPRLL
LSGERGSGQTSHLAPALLHTLERFSVHRLDLPALYSVSAKTPEESCAQIFREARRTVPSIVYMPHIGDWW
EAVSETVRATFLTLLQDIPSFSPIFLLSTSETMYSELPEEVKCIFRIQYEEVLYIQRPIEEDRRKFFQEL
ILNQASMAPPRRKHAALCAMEVLPLALPSPPRQLSESEKSRMEDQEENTLRELRLFLRDVTKRLATDKRF
NIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRH
RACTLKDTAHAIIAAELDPEFNKLCEEIKEARIKRGLSVTSEQINPHSTGARKTETRVEEAFRHKQRNPM
DVWHNSANKCAFRVRRKSRRRSQWGKGIIKKRKVNNLKKDEEDTKFADYENHTEDRKLLENGEFEVSTDC
HEENGEETGDLSMTNDESSCDIMDLDQGQRLNNGAGTKENFASTEEESSNESLLVNSSSSLNPEQTSRKE
TFLKGNCLNGEASTDSFEGIPVLECQNGKLEVVSFCDSGDKCSSEQKILLEDQSKEKPETSTENHGDDLE
KLEALECSNNEKLEPGSDVEVKDAELDKEGASKVKKYRKLILEQAKTTSLELVPEEPSEPVPPLIVDRER
LKKLLDLLVDKSNNLAVDQLERLYSLLSQCIYRHRKDYDKSQLVEEMERTVHMFETFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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