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Report for CCDS46289.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46289.1 Public Homo sapiens 2 PPP4R3B 24 110 108 CCDS HistoryNCBI Gene:57223Re-query CCDS DB by CCDS ID:46289.1Re-query CCDS DB by GeneID:57223See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46289.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616407.2 ENSP00000483228.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000616407.2Link to Ensembl Protein Viewer:ENSP00000483228.1Re-query CCDS DB by Nucleotide ID:ENST00000616407Re-query CCDS DB by Protein ID:ENSP00000483228
Original member Current member NCBI NM_001122964.3 NP_001116436.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001122964.3Link to Protein Sequence:NP_001116436.3Re-query CCDS DB by Nucleotide ID:NM_001122964Re-query CCDS DB by Protein ID:NP_001116436Link to BLAST:NP_001116436.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116436.3 849 Q5MIZ7-1 849 100% 0 0

Chromosomal Locations for CCDS 46289.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 55549911 55550006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55558775 55558968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55564313 55564497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55564902 55565041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55568194 55568363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55573619 55573777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55577315 55577356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55578247 55578342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55579679 55579781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55581567 55581698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55585051 55585167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55586618 55586734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55588879 55588956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55598416 55599039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55603978 55604076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55615451 55615506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55617144 55617285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2550 nt):
ATGTCGGATACGCGGCGGCGAGTGAAGGTCTATACCCTGAACGAAGACCGGCAATGGGACGACCGAGGCA
CCGGGCACGTCTCCTCCACTTACGTGGAGGAGCTCAAGGGGATGTCGCTGCTGGTTCGGGCAGAGTCCGA
CGGATCACTACTCTTGGAATCAAAGATAAATCCAAATACTGCATATCAGAAACAACAGGATACATTAATT
GTTTGGTCAGAAGCAGAGAACTATGATTTGGCTCTGAGTTTTCAGGAGAAAGCTGGCTGTGATGAGATCT
GGGAAAAAATTTGTCAGGTTCAAGGTAAAGACCCATCAGTGGAAGTCACACAGGACCTCATTGATGAATC
TGAAGAAGAACGATTTGAAGAAATGCCTGAAACTAGTCATCTGATTGACCTGCCCACATGTGAACTCAAT
AAACTTGAAGAGATTGCTGACTTAGTTACCTCAGTGCTCTCCTCACCTATCCGTAGGGAAAAGCTGGCTC
TCGCCTTGGAAAATGAAGGCTATATTAAAAAACTATTGCAGCTGTTCCAAGCTTGCGAGAACCTAGAAAA
CACTGAAGGCTTACACCATTTGTATGAAATTATTAGAGGAATCTTATTCCTAAATAAGGCAACTCTTTTT
GAGGTAATGTTTTCTGATGAGTGTATCATGGATGTCGTGGGATGCCTTGAATATGACCCTGCTTTGGCTC
AGCCAAAAAGACATAGAGAATTCTTGACCAAAACTGCAAAGTTCAAGGAAGTTATACCAATAACAGACTC
TGAACTAAGGCAAAAAATACATCAGACTTACAGGGTACAGTACATTCAGGACATCATTTTGCCCACACCA
TCTGTTTTTGAAGAGAATTTTCTTTCTACTCTTACGTCTTTTATTTTCTTCAACAAAGTTGAGATAGTCA
GCATGTTGCAGGAAGATGAGAAGTTTTTGTCTGAAGTTTTTGCACAATTAACAGATGAGGCTACAGATGA
TGATAAACGGCGTGAATTGGTTAATTTTTTCAAGGAGTTTTGTGCATTTTCTCAGACATTACAACCTCAA
AACAGGGATGCATTTTTCAAAACATTGGCAAAATTGGGAATTCTTCCTGCTCTTGAAATTGTAATGGGCA
TGGATGATTTGCAAGTCAGATCAGCTGCTACAGATATATTTTCTTATCTAGTAGAATTTAGTCCATCTAT
GGTCCGAGAGTTTGTAATGCAAGAAGCTCAGCAGAGTGATGACGATATTCTTCTTATTAATGTGGTAATT
GAACAAATGATCTGTGATACTGATCCTGAGCTAGGAGGCGCTGTTCAGTTAATGGGACTTCTTCGTACTC
TAATTGATCCAGAGAACATGCTGGCTACAACTAATAAAACCGAAAAAAGTGAATTTCTAAATTTTTTCTA
CAACCATTGTATGCATGTTCTCACAGCACCACTTTTGACCAATACTTCAGAAGACAAATGTGAAAAGGAT
TTTTTTTTAAAACATTACAGATATAGTTGGAGTTTCATATGTACCCCTTCACATTCCCATTCCCATTCTA
CCCCCTCTTCCTCCATCTCTCAAGATAATATAGTTGGATCAAACAAAAACAACACAATTTGTCCCGATAA
TTATCAAACAGCACAGCTACTTGCCTTAATTTTAGAGTTACTCACATTTTGTGTGGAACATCACACATAT
CACATAAAAAACTATATTATGAACAAGGACTTGCTAAGAAGAGTCTTGGTCTTGATGAATTCAAAGCACA
CTTTTCTGGCCTTGTGTGCCCTTCGCTTTATGAGGCGGATAATTGGACTTAAAGATGAATTTTATAATCG
TTACATCACCAAGGGAAATCTTTTTGAGCCAGTTATAAATGCACTTCTGGATAATGGAACTCGGTATAAT
CTGTTGAATTCAGCTGTTATTGAGTTGTTTGAATTTATAAGAGTGGAAGATATCAAGTCTCTTACTGCCC
ATATAGTTGAAAACTTTTATAAAGCACTTGAATCGATTGAATATGTTCAGACATTCAAAGGATTGAAGAC
TAAATATGAGCAAGAAAAAGACAGACAAAATCAGAAACTGAACAGTGTACCATCTATATTGCGTAGTAAC
AGATTTCGCAGAGATGCAAAAGCCTTGGAAGAGGATGAAGAAATGTGGTTTAATGAAGATGAAGAAGAGG
AAGGAAAAGCAGTTGTGGCACCAGTGGAAAAACCTAAGCCAGAAGATGATTTTCCAGATAATTATGAAAA
GTTTATGGAGACTAAAAAAGCAAAAGAAAGTGAAGACAAGGAAAACCTTCCCAAAAGGACATCTCCTGGT
GGCTTCAAATTTACTTTCTCCCACTCTGCCAGTGCTGCTAATGGAACAAACAGTAAATCTGTAGTGGCTC
AGATACCACCAGCAACTTCTAATGGATCCTCTTCCAAAACCACAAACTTGCCTACGTCAGTAACAGCCAC
CAAGGGAAGTTTGGTTGGCTTAGTGGATTATCCAGATGATGAAGAGGAAGATGAAGAAGAAGAATCGTCC
CCCAGGAAAAGACCTCGTCTTGGCTCATAA

Translation (849 aa):
MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLI
VWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPTCELN
KLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLF
EVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTP
SVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQ
NRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVI
EQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDKCEKD
FFLKHYRYSWSFICTPSHSHSHSTPSSSISQDNIVGSNKNNTICPDNYQTAQLLALILELLTFCVEHHTY
HIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYN
LLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSN
RFRRDAKALEEDEEMWFNEDEEEEGKAVVAPVEKPKPEDDFPDNYEKFMETKKAKESEDKENLPKRTSPG
GFKFTFSHSASAANGTNSKSVVAQIPPATSNGSSSKTTNLPTSVTATKGSLVGLVDYPDDEEEDEEEESS
PRKRPRLGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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